Joseph7e / Assign-Taxonomy-with-BLASTLinks
Assign taxonomy with blast, can be used for qiime
☆24Updated 6 months ago
Alternatives and similar repositories for Assign-Taxonomy-with-BLAST
Users that are interested in Assign-Taxonomy-with-BLAST are comparing it to the libraries listed below
Sorting:
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- ☆21Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆70Updated last month
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆65Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- Automatic Assembly For The Fungi☆25Updated last month
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Genome wide orthology inference and dNdS estimation☆96Updated last month
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated last month
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆59Updated 8 months ago
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆45Updated last year
- starfish: a modular toolkit for giant mobile element annotation☆33Updated 10 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 2 months ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆30Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆34Updated last month
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year
- An R package designed for drawing gene arrow maps☆90Updated 2 weeks ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆66Updated 3 years ago
- Discover and annotate the virome☆53Updated last week
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- ☆40Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago