Joseph7e / Assign-Taxonomy-with-BLAST
Assign taxonomy with blast, can be used for qiime
☆22Updated last month
Alternatives and similar repositories for Assign-Taxonomy-with-BLAST
Users that are interested in Assign-Taxonomy-with-BLAST are comparing it to the libraries listed below
Sorting:
- BEAV: Bacterial Element Annotation reVamped☆65Updated 6 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- A massively parallel tool for model selection and tree inference on thousands of genes☆48Updated last year
- ☆20Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 7 months ago
- Discover and annotate the virome☆42Updated last month
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- An R package designed for drawing gene arrow maps☆77Updated 3 weeks ago
- Using ggtree to build phylogenetic trees☆47Updated 6 months ago
- Rank-based Gene Ontology analysis of gene expression data☆41Updated 2 years ago
- starfish: a modular toolkit for giant mobile element annotation☆29Updated 5 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated 2 years ago
- Helper scripts for making phylogenies☆15Updated 11 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- ☆50Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆29Updated last year
- Automatic Assembly For The Fungi☆20Updated 3 months ago
- Synteny Imager☆62Updated 8 months ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 2 weeks ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated this week
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year