Joseph7e / Assign-Taxonomy-with-BLAST
Assign taxonomy with blast, can be used for qiime
☆21Updated last year
Related projects ⓘ
Alternatives and complementary repositories for Assign-Taxonomy-with-BLAST
- Automated de novo assembly of whole chloroplast genomes.☆44Updated last month
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- A massively parallel tool for model selection and tree inference on thousands of genes☆42Updated 8 months ago
- BEAV: Bacterial Element Annotation reVamped☆59Updated 3 weeks ago
- Discover and annotate the virome☆31Updated last month
- Synteny Imager☆60Updated 2 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆65Updated 6 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated 2 years ago
- STAG: Species Tree from All Genes☆31Updated 5 years ago
- Metagenomics-related extended functionalities to samtools☆19Updated last year
- ☆17Updated 2 months ago
- Microbial Populations as Clusters Of Gene Transfer☆42Updated 11 months ago
- IS mapping software☆51Updated 2 years ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆38Updated 4 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated last year
- ☆45Updated 7 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- ☆24Updated 5 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆39Updated 4 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- ☆34Updated 2 years ago
- Documentation for Evolview☆26Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- ☆21Updated 10 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆32Updated last year
- ☆44Updated 2 weeks ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆44Updated 5 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago