Alternatives and similar repositories for eDNA_metabarcoding

Users that are interested in eDNA_metabarcoding are comparing it to the libraries listed below

• VascoElbrecht / JAMP
  JAMP - Just Another Metabarcoding Pipeline
  ☆39Updated 4 years ago
• pmartinezarbizu / pairwiseAdonis
  Pairwise multilevel comparison using adonis
  ☆80Updated 2 years ago
• uit-metabarcoding / MJOLNIR
  MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R
  ☆18Updated 5 months ago
• TheWangLab / algatr
  A Landscape Genomic Analysis Toolkit in R
  ☆21Updated 2 months ago
• nmatzke / BioGeoBEARS
  BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts
  ☆72Updated 2 months ago
• defleury / Schmidt_et_al_2016_community_similarity
  Analysis code for a manuscript on community similarity computation
  ☆14Updated 6 years ago
• gauravsk / ranacapa
  R package for downstream analysis for anacapa eDNA pipeline
  ☆22Updated 4 years ago
• brendanf / FUNGuildR
  Look Up Guild Information for Fungi in R
  ☆23Updated 10 months ago
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆47Updated 4 months ago
• GuillemSalazar / EcolUtils
  Utilities for community ecology analysis
  ☆19Updated 5 years ago
• metabaRfactory / metabaR
  metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
  ☆17Updated 6 months ago
• liamrevell / phytools
  ☆228Updated last week
• thibautjombart / adegenet
  adegenet: a R package for the multivariate analysis of genetic markers
  ☆198Updated last year
• grunwaldlab / Population_Genetics_in_R
  A primer for computational tools to analyze genetics of populations in R
  ☆89Updated 4 years ago
• Tom-Jenkins / mapmixture
  R package and web app for spatial visualisation of admixture on a projected map
  ☆46Updated 10 months ago
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆151Updated last month
• VascoElbrecht / PrimerMiner
  R mased batch sequence downloader, with primer development and in silico evaluation capabilities
  ☆36Updated last year
• simjoly / CourseComparativeMethods
  Examples of application of comparative methods in R
  ☆60Updated 3 years ago
• surh / scip_barplot
  Workshop materials for SFSU SCIP 2022.
  ☆16Updated 3 years ago
• wtesto / SpeciesOccurrenceMapping
  Species occurrence dot maps in R
  ☆21Updated 3 years ago
• traitecoevo / fungaltraits
  A dynamic database of fungal trait measurements
  ☆83Updated 5 years ago
• eriqande / CKMRsim
  efficient sampling for close-kin mark recapture power estimation
  ☆14Updated 7 months ago
• grunwaldlab / metacoder
  Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
  ☆144Updated 11 months ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆72Updated 4 months ago
• bulksoil / BioProtocol
  Repo for a Microbiome Protocol
  ☆10Updated 7 years ago
• riffomonas / distances
  ☆14Updated last year
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated 3 months ago
• yoann-dufresne / SLIM
  A web app for environmental DNA metabarcoding analysis
  ☆11Updated 4 years ago
• adw96 / breakaway
  Species richness with high diversity
  ☆68Updated 6 months ago
• HullUni-bioinformatics / metaBEAT
  Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool
  ☆20Updated 6 years ago