Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)
☆12Jul 6, 2022Updated 3 years ago
Alternatives and similar repositories for eDNA_metabarcoding
Users that are interested in eDNA_metabarcoding are comparing it to the libraries listed below
Sorting:
- eDNA metabarcoding pipeline☆44Jan 22, 2026Updated last month
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆13Jun 28, 2023Updated 2 years ago
- Il WMS del catasto dell'Agenzia delle Entrate: licenza, come usarlo in QGIS, estrazione dati e digitalizzazione particelle☆14Oct 28, 2022Updated 3 years ago
- PlantCV Workshops☆15Mar 8, 2021Updated 4 years ago
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Jul 23, 2025Updated 7 months ago
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Jul 30, 2020Updated 5 years ago
- Spatio-temporal geostatistical mapping of meteorological data.☆21Oct 2, 2024Updated last year
- Data Cleaning with OpenRefine for Ecologists☆29Updated this week
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆24Jul 15, 2025Updated 7 months ago
- Pipeline to Extract Plant Phenotypes from Reference Data☆25Feb 24, 2025Updated last year
- Ecology Workshop Overview☆21Updated this week
- Introduction to Cloud Computing for Genomics☆21Feb 17, 2026Updated last week
- Project Organization and Management for Genomics☆25Updated this week
- R mased batch sequence downloader, with primer development and in silico evaluation capabilities☆36Oct 30, 2024Updated last year
- Introduction to Geospatial Concepts☆40Updated this week
- Intro to R and RStudio for Genomics☆30Feb 17, 2026Updated last week
- creating reference databases for amplicon sequencing☆48Jan 13, 2026Updated last month
- A package for population structure inference from RAD-seq data☆34May 14, 2021Updated 4 years ago
- ☆12Apr 8, 2021Updated 4 years ago
- ☆12Feb 26, 2019Updated 7 years ago
- Data Organization in Spreadsheets for Ecologists☆43Feb 10, 2026Updated 2 weeks ago
- 📦 R package to compute functional diversity indices efficiently☆40Sep 29, 2025Updated 5 months ago
- TianGong-LCA-NEXT☆19Updated this week
- AlphaImpute2: pedigree- and population-based genotype imputation☆12Dec 19, 2025Updated 2 months ago
- polysat 1.7: tools for polyploid microsatellite analysis☆12Dec 20, 2024Updated last year
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago
- Geospatial Workshop Overview☆40Feb 17, 2026Updated last week
- I do not have time to maintain this anymore! It remains as a sandbox/playground :)☆11May 13, 2024Updated last year
- Refining the Shortest Paths (RSP) of animals tracked with acoustic transmitters in estuarine regions☆17Nov 25, 2025Updated 3 months ago
- efficient sampling for close-kin mark recapture power estimation☆15Jun 26, 2025Updated 8 months ago
- ☆17Nov 18, 2025Updated 3 months ago
- ☆13Feb 22, 2024Updated 2 years ago
- An R package that facilitates the identification of animal aggregations of potential conservation significance based on individual tracki…☆13Jul 2, 2025Updated 7 months ago
- ☆13Aug 30, 2024Updated last year
- Introduction to R for Geospatial Data☆48Updated this week
- A small R notebook describing how plot common (aDNA) population genetics PCAs using R and the tidyverse.☆14May 3, 2019Updated 6 years ago
- Downsample fastq files in an automated way☆12May 7, 2020Updated 5 years ago
- ☆11Jun 25, 2025Updated 8 months ago
- ☆12Dec 16, 2021Updated 4 years ago