HullUni-bioinformatics / metaBEATLinks
Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool
☆20Updated 6 years ago
Alternatives and similar repositories for metaBEAT
Users that are interested in metaBEAT are comparing it to the libraries listed below
Sorting:
- JAMP - Just Another Metabarcoding Pipeline☆37Updated 3 years ago
- Various functions for analysis of microbial community data☆46Updated last week
- BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts☆70Updated 6 months ago
- diversity estimation under ecological networks☆83Updated 2 months ago
- ☆21Updated 2 years ago
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆23Updated 2 months ago
- Pairwise multilevel comparison using adonis☆78Updated 2 years ago
- A web app for environmental DNA metabarcoding analysis☆10Updated 3 years ago
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆71Updated 3 weeks ago
- Species richness with high diversity☆67Updated 2 months ago
- R package for downstream analysis for anacapa eDNA pipeline☆22Updated 3 years ago
- creating reference databases for amplicon sequencing☆40Updated last week
- Analysis code for a manuscript on community similarity computation☆14Updated 6 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- PHYLOgenomic analysis pipeline for HERBarium specimens☆17Updated 5 months ago
- Utilities for community ecology analysis☆19Updated 5 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆16Updated 2 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 7 months ago
- Examples of application of comparative methods in R☆60Updated 3 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated last year
- Code to run the shiny functions for the MASAME suite☆28Updated 5 years ago
- Look Up Guild Information for Fungi in R☆22Updated 6 months ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆19Updated last week
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆16Updated 2 months ago
- RADseq Data Exploration, Manipulation and Visualization using R☆59Updated last month
- An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.☆149Updated 2 years ago
- A program for multimodel inference on speciation and trait evolution☆34Updated 8 years ago
- Phylogenetic penalized likelihood☆52Updated 3 months ago
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- the hierfstat package☆25Updated 10 months ago