mahsa-mousavi / eDNAFlowLinks
☆21Updated 2 years ago
Alternatives and similar repositories for eDNAFlow
Users that are interested in eDNAFlow are comparing it to the libraries listed below
Sorting:
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆47Updated 3 weeks ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆19Updated 4 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆49Updated last year
- creating reference databases for amplicon sequencing☆39Updated last month
- functions for analyzing phyloseq data☆28Updated 5 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- ☆76Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆61Updated 10 months ago
- ☆56Updated last week
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆15Updated last month
- Working with the outputs of sourmash in R☆27Updated last year
- Compare different differential abundance and expression methods☆50Updated 3 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 4 months ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 8 months ago
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆21Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆38Updated last week
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆62Updated 2 years ago
- SourceTracker2☆76Updated last year
- ☆41Updated 7 years ago
- R package for microbial pangenomics☆24Updated 3 years ago
- ☆36Updated 3 months ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- General procedure for making QIIME 2 compatible SILVA reference files☆20Updated 9 months ago
- 16S taxonomy assignment using an ecosystem-specific database.☆17Updated 2 years ago
- ☆39Updated last year
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago