enasequence / cramtoolsLinks
CRAM format specification and java API for read data.
☆60Updated 6 years ago
Alternatives and similar repositories for cramtools
Users that are interested in cramtools are comparing it to the libraries listed below
Sorting:
- Tools for bam file processing☆55Updated 10 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- ☆38Updated 5 months ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆85Updated 9 months ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- Aligner for sequencing data☆21Updated 9 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆66Updated 10 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Maximum likelihood demultiplexing☆47Updated 5 months ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆48Updated 4 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 9 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated last year