enasequence / cramtools
CRAM format specification and java API for read data.
☆59Updated 6 years ago
Alternatives and similar repositories for cramtools:
Users that are interested in cramtools are comparing it to the libraries listed below
- Tools for bam file processing☆55Updated 9 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Updated 8 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- ☆30Updated 8 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- High-performance error correction for Illumina resequencing data☆70Updated 8 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 4 years ago
- An awk-like VCF parser☆56Updated last year
- RTG Core: Software for alignment and analysis of next-gen sequencing data.☆47Updated last year
- PacBio BAM C++ library☆21Updated last year
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Updated 9 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- ☆94Updated 2 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆82Updated this week
- Utilities to create and analyze gVCF files☆38Updated 8 years ago
- Assembly Based ReAligner☆73Updated 6 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago