CRAM format specification and java API for read data.
☆59Oct 2, 2018Updated 7 years ago
Alternatives and similar repositories for cramtools
Users that are interested in cramtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FASTQ compression via boosting Sequence Compression Algorithms using Locally Consistent Encoding☆14Sep 11, 2020Updated 5 years ago
- Efficient base quality score recalibrator for NGS data☆24Nov 28, 2015Updated 10 years ago
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- Overlapping Reads COmpression with Minimizers☆16May 19, 2022Updated 3 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- Fast, efficient, lossless compression of fastq files☆14Jan 4, 2021Updated 5 years ago
- NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.☆58Aug 21, 2014Updated 11 years ago
- Tools for bam file processing☆55Apr 20, 2015Updated 10 years ago
- New url: https://github.com/biointec/halvade☆19Apr 19, 2017Updated 8 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Aug 24, 2016Updated 9 years ago
- Pipeline in place at the UGI for DNA level analysis☆11Aug 29, 2016Updated 9 years ago
- Scripts to visualize the thumbnail images from illumina sequencing machines☆14Mar 16, 2016Updated 10 years ago
- Dump slurm accounting database to sqlite3 database for easy analysis☆16Mar 24, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 8 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆342Feb 22, 2026Updated last month
- GenomicsDB☆109Jan 3, 2023Updated 3 years ago
- Metagenomic binning suite☆29Sep 30, 2022Updated 3 years ago
- Java Bindings (JNI) for bwa☆20Dec 15, 2016Updated 9 years ago
- A 3'-end adapter contaminant trimmer☆96Jan 23, 2018Updated 8 years ago
- Tools for working with SAM/BAM data☆609Dec 22, 2024Updated last year
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Dec 26, 2022Updated 3 years ago
- Interactive web-based genome browser.☆228Aug 28, 2019Updated 6 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- Shiny browser for single cell RNAseq data☆12Oct 7, 2022Updated 3 years ago
- ☆11Feb 14, 2023Updated 3 years ago
- workflow and resource management system for bioinformatics data analysis☆70Oct 29, 2020Updated 5 years ago
- GenNotes – public consensus annotation of genetic variants☆11Mar 27, 2016Updated 10 years ago
- Docker container running carbon-cache, graphite-web, statsite and grafana☆12Sep 6, 2016Updated 9 years ago
- The gkno launcher for executing tools or pipelines☆31Jan 17, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Nov 25, 2019Updated 6 years ago
- ☆13Mar 31, 2018Updated 8 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- An ultra light YAML-based pipeline execution engine☆20Aug 30, 2017Updated 8 years ago
- SURPI☆86May 10, 2016Updated 9 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Jun 30, 2017Updated 8 years ago