ddcap / halvade
New url: https://github.com/biointec/halvade
☆19Updated 7 years ago
Alternatives and similar repositories for halvade:
Users that are interested in halvade are comparing it to the libraries listed below
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 6 years ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆70Updated 2 years ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Updated 8 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 5 years ago
- GenomicsDB☆111Updated 2 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Updated 7 years ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Updated 9 years ago
- A scalable genome browser. Apache 2 licensed.☆125Updated 2 years ago
- BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).☆31Updated 2 years ago
- Isaac Genome Alignment Software☆36Updated 10 years ago
- Parallel Genomic Analysis Toolkit☆14Updated 6 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆33Updated 7 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆40Updated last month
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Parallel read alignment and variant calling using MapReduce☆19Updated 6 years ago
- [Bio in Docker] Symposium 2015☆21Updated 7 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…☆143Updated 6 years ago
- Population Stratification Analysis on Genomics Data Using Deep Learning☆26Updated 8 years ago
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Updated 7 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines☆65Updated 4 years ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆98Updated 7 years ago
- Tools for early stage alignment file processing☆93Updated 6 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Java Bindings (JNI) for bwa☆19Updated 8 years ago
- BigDataScript: Scirpting language for big data☆92Updated 4 years ago
- High performance data storage for importing, querying and transforming variants.☆98Updated 3 weeks ago