Analysis Framework for Biological Data from High Throughput Experiments
☆34Aug 24, 2016Updated 10 years ago
Alternatives and similar repositories for ngsane
Users that are interested in ngsane are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Wrappers around NGS peak callers to both call peaks and run IDR☆11Aug 2, 2013Updated 13 years ago
- ☆17Sep 24, 2013Updated 13 years ago
- example of shiny plots which react to clicking on points☆11Jun 18, 2015Updated 11 years ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines☆68Jun 3, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 10 years ago
- streaming, flexible agglomerative clustering☆13Oct 29, 2014Updated 12 years ago
- ☆13Aug 30, 2025Updated last year
- A tool to identify, annotate and visualise splicing switch events from RNA-seq data☆14Aug 26, 2015Updated 11 years ago
- Infrastructure code to support DNA pipeline☆38May 5, 2015Updated 11 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆91Oct 5, 2026Updated 3 weeks ago
- A support vector machine for calling variants from next-gen sequencing data☆15Dec 12, 2013Updated 12 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- SAGA-based Pilot-Job Implementation for Compute and Data☆19Mar 14, 2026Updated 7 months ago
- ☆10Dec 12, 2017Updated 8 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆243Aug 11, 2021Updated 5 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆24Apr 15, 2021Updated 5 years ago
- collection of small scripts or how-tos that don't fall under a separate project☆20Oct 18, 2017Updated 9 years ago
- ☆16Dec 19, 2016Updated 9 years ago
- Anno is a variant annotation tool☆24May 18, 2016Updated 10 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆53Nov 5, 2022Updated 3 years ago
- example ruffus pipeline☆18Sep 30, 2011Updated 15 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Genetic changes we can believe in: a web based tool for variant visualization and analysis☆18Apr 17, 2013Updated 13 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆99Apr 9, 2023Updated 3 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 5 months ago
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆181Nov 26, 2018Updated 7 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- Useful FILe and stream Operations☆45Dec 21, 2015Updated 10 years ago
- The gkno launcher for executing tools or pipelines☆31Jan 17, 2017Updated 9 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 11 years ago
- Utility programs to trim or sort Illumina reads with adapter sequences☆15Jul 23, 2013Updated 13 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tools for next-generation sequencing analysis☆90Jun 25, 2019Updated 7 years ago
- Concordance between variant callers☆17Nov 27, 2014Updated 11 years ago
- Creates a rarefaction curve to measure complexity in RNA Seq data using start position☆13Apr 2, 2017Updated 9 years ago
- Tools for handling HiC and 5C data☆24Feb 5, 2024Updated 2 years ago
- Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science☆19Oct 17, 2016Updated 10 years ago
- RNA mapping pipeline☆19Jun 3, 2018Updated 8 years ago
- The Genome Modeling System installer☆78Jul 10, 2015Updated 11 years ago