Alternatives and similar repositories for ORCOM:

Users that are interested in ORCOM are comparing it to the libraries listed below

• sfu-compbio / scalce
  FASTQ compression via boosting Sequence Compression Algorithms using Locally Consistent Encoding
  ☆13Updated 4 years ago
• chhylp123 / FMtree
  FMtree: A fast locating algorithm of FM-indexes for genomic data
  ☆18Updated 7 years ago
• refresh-bio / fqsqueezer
  FQSqueezer - FASTQ compressor based on k-mer statistics
  ☆15Updated last year
• lh3 / ropebwt2
  Incremental construction of FM-index for DNA sequences
  ☆70Updated 9 months ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆35Updated 2 years ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆78Updated last year
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆49Updated last month
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆53Updated 2 weeks ago
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆40Updated last month
• lh3 / gwfa
  Proof-of-concept implementation of GWFA for sequence-to-graph alignment
  ☆57Updated 10 months ago
• nanoporetech / pyspoa
  Python bindings to spoa
  ☆19Updated last year
• ekg / HLA-zoo
  genome variation graphs constructed from HLA GRCh38 ALTs
  ☆23Updated 3 years ago
• refresh-bio / colord
  A versatile compressor of third generation sequencing reads.
  ☆50Updated last year
• HongzheGuo / deBGA
  de Bruijn Graph-based read aligner
  ☆33Updated 6 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• seryrzu / unialigner
  ☆64Updated 11 months ago
• bkehr / popins
  Population-scale detection of novel sequence insertions
  ☆27Updated 2 years ago
• jltsiren / gcsa2
  BWT-based index for graphs
  ☆71Updated 2 weeks ago
• ocxtal / libgaba
  Adaptive semi-global banded alignment on string graphs
  ☆65Updated 6 years ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 10 months ago
• dnbaker / dashing2
  Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
  ☆63Updated 9 months ago
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 4 years ago
• COMBINE-lab / cuttlefish
  Building the compacted de Bruijn graph efficiently from references or reads.
  ☆86Updated last month
• mohsenzakeri / Movi
  Fast and cache-efficient full-text pangenome index
  ☆27Updated this week
• viq854 / bwbble
  Read alignment with a multi-genome reference
  ☆22Updated 5 years ago
• lh3 / ropebwt3
  BWT construction and search
  ☆112Updated 3 weeks ago
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆40Updated 2 months ago
• dfguan / rHAT
  Pacbio sequence alignment tool, please use "git clone" to copy and use the repository
  ☆18Updated 6 years ago
• Kmer-File-Format / kff-tools
  ☆17Updated last year
• isovic / minialign
  Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.
  ☆10Updated 7 years ago