refresh-bio / ORCOMLinks
Overlapping Reads COmpression with Minimizers
☆16Updated 3 years ago
Alternatives and similar repositories for ORCOM
Users that are interested in ORCOM are comparing it to the libraries listed below
Sorting:
- Incremental construction of FM-index for DNA sequences☆72Updated last year
- BWT-based index for graphs☆73Updated 10 months ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 2 months ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 4 years ago
- Substring index for paths in a graph☆60Updated this week
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Updated last year
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 10 months ago
- Adaptive semi-global banded alignment on string graphs☆66Updated 7 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆111Updated last year
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- FMtree: A fast locating algorithm of FM-indexes for genomic data☆18Updated 8 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆92Updated last week
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56Updated last year
- ☆12Updated 6 years ago
- Practical Dynamic de Bruijn Graphs☆18Updated 5 years ago
- Parallel Sequence to Graph Alignment☆36Updated 3 years ago
- A repository for generating strobemers and evalaution☆79Updated last year
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Updated 8 years ago
- compacted de Bruijn graph construction in low memory☆100Updated 3 months ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆15Updated 9 years ago
- De Bruijn graph representation in low memory☆35Updated last year
- A hash map using the BooPHF perfect hash function☆13Updated 9 years ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆52Updated 3 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Updated 5 years ago
- de Bruijn Graph-based read aligner☆35Updated 7 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.☆18Updated 3 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Updated last month
- FASTQ compression via boosting Sequence Compression Algorithms using Locally Consistent Encoding☆14Updated 5 years ago