vsbuffalo / scythe

Related projects ⓘ

Alternatives and complementary repositories for scythe

• grenaud / deML
  Maximum likelihood demultiplexing
  ☆46Updated last year
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 6 years ago
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆68Updated 2 years ago
• arq5x / bedtools-protocols
  ☆78Updated 10 years ago
• jts / nanocorrect
  Experimental pipeline for correcting nanopore reads
  ☆39Updated 7 years ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆92Updated 8 years ago
• cc2qe / vawk
  An awk-like VCF parser
  ☆54Updated 10 months ago
• frankMusacchia / Annocript
  Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …
  ☆54Updated 4 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated 3 weeks ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆45Updated 4 years ago
• relipmoc / skewer
  ☆95Updated 2 years ago
• Oshlack / Lace
  Building SuperTranscripts: A linear representation of transcriptome data
  ☆67Updated 3 years ago
• tseemann / VelvetOptimiser
  Automatically optimise three of Velvet's assembly parameters.
  ☆47Updated 2 years ago
• mw55309 / Kraken_db_install_scripts
  Updated Kraken DB install scripts to cope with new-ish NCBI structure
  ☆46Updated 7 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• Czh3 / NGSTools
  Next-Generation Sequencing(NGS) toolkits.
  ☆44Updated 8 years ago
• csf-ngs / fastqc
  csf fork of fastqc for usage on selected reads of unaligned bam file
  ☆49Updated 11 years ago
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆69Updated 8 years ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆67Updated 8 months ago
• ExpressionAnalysis / ea-utils
  Automatically exported from code.google.com/p/ea-utils
  ☆95Updated last year
• guyduche / Blast2Bam
  Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
  ☆46Updated 3 years ago
• lh3 / tabtk
  Toolkit for processing TAB-delimited format
  ☆59Updated last month
• CshlSiepelLab / phast
  PHAST
  ☆68Updated this week
• Kingsford-Group / scallop
  Scallop is a reference-based transcriptome assembler for RNA-seq
  ☆89Updated 3 years ago
• Cibiv / Teaser
  A tool to benchmark mappers and different parameters within minutes
  ☆43Updated 5 years ago
• Magdoll / Cogent
  Coding Genome Reconstruction using Iso-Seq data
  ☆60Updated 3 years ago
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated last year
• harvardinformatics / TranscriptomeAssemblyTools
  A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…
  ☆47Updated 8 months ago
• najoshi / sabre
  ☆61Updated 3 years ago