Alternatives and similar repositories for bioruby-ucsc-api

Users that are interested in bioruby-ucsc-api are comparing it to the libraries listed below

• rjpbonnal / bioruby-ngs

  View on GitHub
  This plugins is intended to wrap the common software used for Next Generation Sequencing data
  ☆28Jan 18, 2023Updated 3 years ago
• NickRoz1 / gbam

  View on GitHub
  ☆16Aug 25, 2025Updated 5 months ago
• rajewsky-lab / planarian_lineages

  View on GitHub
  ☆27Apr 18, 2018Updated 7 years ago
• MoTrPAC / MotrpacRatTraining6mo

  View on GitHub
  Analysis of the MoTrPAC endurance exercise training study in 6-month-old rats
  ☆11Sep 30, 2024Updated last year
• caballero / SeqComplex

  View on GitHub
  Algorithms to compute DNA complexity
  ☆35May 24, 2022Updated 3 years ago
• rladiesamsterdam / 2021_Sept_Bayesian_statistics

  View on GitHub
  Repository for Rladies Amsterdam event- Intro to Bayesian Statistics
  ☆11Sep 27, 2021Updated 4 years ago
• KrishnaswamyLab / Cell-Dynamics-Pipeline

  View on GitHub
  ☆10Dec 8, 2023Updated 2 years ago
• ElsevierSoftwareX / SOFTX-D-16-00070

  View on GitHub
  python simulation interface for molecular modeling. To cite this software publication: https://www.sciencedirect.com/science/article/pii/…
  ☆13Aug 24, 2016Updated 9 years ago
• HKU-BAL / Translocator

  View on GitHub
  Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…
  ☆12Jan 22, 2020Updated 6 years ago
• teunissenstefan / chatgpt-gui

  View on GitHub
  GTK 4 front-end to ChatGPT completions written in Rust
  ☆11Nov 2, 2025Updated 3 months ago
• TomSkelly / PacBioEDA

  View on GitHub
  Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data
  ☆18Aug 13, 2014Updated 11 years ago
• kojix2 / ruby-htslib

  View on GitHub
  HTSlib bindings for Ruby
  ☆11Jan 13, 2026Updated last month
• odb9402 / CNNPeaks

  View on GitHub
  The ChIP-Seq peak calling algorithm using convolution neural networks
  ☆15Jan 18, 2021Updated 5 years ago
• rli012 / CancerMIRNome

  View on GitHub
  CancerMIRNome - an interactive analysis and visualization database for miRNome profiles of human cancer
  ☆12Aug 9, 2024Updated last year
• jokergoo / ComplexHeatmap-examples

  View on GitHub
  ☆10Apr 10, 2021Updated 4 years ago
• enasequence / cramtools

  View on GitHub
  CRAM format specification and java API for read data.
  ☆59Oct 2, 2018Updated 7 years ago
• noir55 / voicevox_cli_client

  View on GitHub
  VOICEVOX ENGINE、VOICEVOX NEMO ENGINE、COEIROINK用コマンドラインクライアント。複数のエンジンを使用した並列処理もできます
  ☆11May 4, 2024Updated last year
• nuin / beginning-python-for-bioinformatics

  View on GitHub
  repository for the code featured in the blog
  ☆22Jan 31, 2009Updated 17 years ago
• wurmlab / genevalidatorapp

  View on GitHub
  A web wrapper for GeneValidator
  ☆11Feb 12, 2021Updated 5 years ago
• CahanLab / cancerCellNet

  View on GitHub
  CellNet, for cancer
  ☆10Jul 14, 2022Updated 3 years ago
• englianhu / Coursera-Mastering-Software-Development-in-R

  View on GitHub
  Coursera Advanced R Programming
  ☆13Jan 18, 2023Updated 3 years ago
• Bio-Linux / build-bio-linux

  View on GitHub
  Various scripts and supporting files used in building the Bio-Linux ISO
  ☆11Sep 5, 2017Updated 8 years ago
• kubernetes-sigs / wg-ai-conformance

  View on GitHub
  Proposals and discussions for the AI Conformance Working Group.
  ☆20Dec 17, 2025Updated last month
• UKRSE / UKRSE.github.io

  View on GitHub
  Old website for the UK Society of Research Software Engineers - not the source for the live site at rse.ac.uk. To suggest changes to that…
  ☆12Jun 4, 2024Updated last year
• Jiliang-Hu / Emergent-phases

  View on GitHub
  ☆11Aug 12, 2022Updated 3 years ago
• Spencerfar / djin-aging

  View on GitHub
  The DJIN model of aging.
  ☆10Aug 11, 2022Updated 3 years ago
• jandot / ruby-ensembl-api

  View on GitHub
  A ruby API to the Ensembl database
  ☆40Aug 18, 2011Updated 14 years ago
• outbreak-info / outbreak.api

  View on GitHub
  The data API server for outbreak.info
  ☆11Jan 27, 2025Updated last year
• mvz / gir_ffi-gtk

  View on GitHub
  GirFFI-based bindings for Gtk+. Supports both Gtk+ 2 and Gtk+ 3
  ☆19Jan 5, 2026Updated last month
• fu / p3d

  View on GitHub
  p3d - python module for structural bioinformatics
  ☆22Sep 18, 2018Updated 7 years ago
• ncborcherding / TRGAted

  View on GitHub
  Survival Analysis for Protein-Level TCGA Analysis
  ☆11Nov 30, 2018Updated 7 years ago
• nf-core / methylong

  View on GitHub
  Extract methylation calls from long reads (ONT/ PacBio)
  ☆20Dec 19, 2025Updated last month
• yupenghe / encode_dna_dynamics

  View on GitHub
  Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"
  ☆11Oct 15, 2020Updated 5 years ago
• SciRuby / statsample-timeseries

  View on GitHub
  Bioruby Statsample TimeSeries
  ☆14Aug 6, 2017Updated 8 years ago
• CollepardoLab / CollepardoLab_Chromatin_Model

  View on GitHub
  Source code for "Nucleosome plasticity is a critical element of chromatin liquid–liquid phase separation and multivalent nucleosome inter…
  ☆13Jun 17, 2022Updated 3 years ago
• nickloman / nanopore

  View on GitHub
  Software for nanopore data analysis
  ☆29Sep 10, 2014Updated 11 years ago
• alastair-droop / qsubsec

  View on GitHub
  Simple tokenised template system for SGE
  ☆10Mar 1, 2023Updated 2 years ago
• Ken-Kuroki / julia-100knocks-preprocess

  View on GitHub
  ☆12Aug 2, 2020Updated 5 years ago
• ankane / safetensors-ruby

  View on GitHub
  Simple, safe way to store and distribute tensors
  ☆15Jan 7, 2026Updated last month