misshie / bioruby-ucsc-api
Ruby UCSC API: An API for the UCSC Genome Database
☆19Updated 2 years ago
Alternatives and similar repositories for bioruby-ucsc-api:
Users that are interested in bioruby-ucsc-api are comparing it to the libraries listed below
- Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-☆33Updated 5 years ago
- The MG-RAST pipeline☆24Updated 2 years ago
- ☆12Updated 3 months ago
- Tools for bam file processing☆55Updated 9 years ago
- Utility programs to trim or sort Illumina reads with adapter sequences☆15Updated 11 years ago
- A shell script which implements GATK pipeline for variant calling.☆15Updated 10 years ago
- ☆19Updated 8 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Updated 6 years ago
- Transcript assembly tool using multiple change-point inference to improve 3'UTR annotation☆13Updated 2 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- An extensible Ruby on Rails web-service application and database for visualising HTGS data☆18Updated 11 years ago
- A collection of well-known bioinformatics programs.☆25Updated 9 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- tools for error correction and working with long read data☆44Updated 10 years ago
- A pipeline to assess the quantification of transcripts.☆19Updated 2 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated 2 weeks ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆35Updated 14 years ago
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆21Updated 6 years ago
- The 3rd incarnation of the Wise package for sequence analysis☆22Updated 10 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 7 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆22Updated 6 years ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆21Updated 8 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Chimeric transcript discovery☆8Updated 6 years ago
- ☆13Updated 11 months ago
- Tools for visualizing genomics data☆67Updated 3 years ago