Alternatives and similar repositories for bioruby-ucsc-api

Users that are interested in bioruby-ucsc-api are comparing it to the libraries listed below

• rjpbonnal / bioruby-samtools
  Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-
  ☆33Updated 5 years ago
• favorov / stereogene
  ☆12Updated this week
• MG-RAST / pipeline
  The MG-RAST pipeline
  ☆24Updated 2 years ago
• birney / wise3
  The 3rd incarnation of the Wise package for sequence analysis
  ☆22Updated 10 years ago
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• bnbowman / HlaTools
  A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing
  ☆21Updated 8 years ago
• genevol-usp / HLApers
  ☆13Updated last year
• danmaclean / gee_fu
  An extensible Ruby on Rails web-service application and database for visualising HTGS data
  ☆18Updated 11 years ago
• kimpenn / VERSE
  A versatile and efficient RNA-Seq read counting tool
  ☆16Updated 9 years ago
• Jverma / GATK-pipeline
  A shell script which implements GATK pipeline for variant calling.
  ☆15Updated 10 years ago
• jernst98 / ChromImpute
  ☆16Updated last year
• ryanlayer / svv
  Stupid Simple Structural Variant View
  ☆25Updated 8 years ago
• brentp / bw-python
  python wrapper to dpryan79's bigwig library using cffi
  ☆19Updated 9 years ago
• nickloman / poredb
  ☆19Updated 8 years ago
• karel-brinda / smbl
  SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.
  ☆23Updated 7 years ago
• ChristopherWilks / snaptron
  fast webservices based query tool for large sets of genomic features
  ☆25Updated last week
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 7 years ago
• statOmics / stageR
  stageR package
  ☆13Updated 2 years ago
• aboyle / F-seq
  A Feature Density Estimator for High-Throughput Sequence Tags
  ☆23Updated 3 years ago
• yuifu / millefy
  Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
  ☆29Updated 5 years ago
• andrej-fischer / cloneHD
  High-definition reconstruction of clonal composition from next-generation sequencing data
  ☆41Updated 8 years ago
• lweasel / piquant
  A pipeline to assess the quantification of transcripts.
  ☆19Updated 2 years ago
• bioinform / breakseq2
  BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
  ☆24Updated 9 years ago
• mozack / ubu
  UNC-Chapel Hill Bioinformatics Utilities
  ☆24Updated 9 years ago
• aquaskyline / 16GT
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Updated last year
• boutroslab / cld
  A software for the multispecies design of CRISPR/Cas9 libraries
  ☆35Updated 2 years ago
• isugifNF / GATK-flow
  Nextflow implementation of the GATK HaplotypeCaller pipeline
  ☆13Updated last month
• Teichlab / GPfates
  ☆19Updated 7 years ago
• ccgd-profile / BreaKmer
  A method to identify structural variation from sequencing data in target regions
  ☆31Updated 4 years ago
• TomSkelly / PacBioEDA
  Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data
  ☆18Updated 10 years ago