Alternatives and similar repositories for PrecisionHealthVirtualEnvironment

Users that are interested in PrecisionHealthVirtualEnvironment are comparing it to the libraries listed below

• NathanSkene / EWCE
  Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
  ☆57Updated 3 months ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆45Updated 2 years ago
• montilab / BS831
  Course Materials for Genomics Data Mining
  ☆22Updated 3 months ago
• MalteThodberg / awesome-multitrait-gwas
  List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
  ☆31Updated 3 weeks ago
• shenlab-sinai / GeneOverlap
  R package for testing and visualizing gene list overlaps
  ☆19Updated 8 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆45Updated last year
• eleporcu / TWMR
  ☆23Updated 5 years ago
• RRHO2 / RRHO2
  ☆18Updated 3 years ago
• CBIIT / LDlinkR
  LDlinkR
  ☆59Updated last year
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆58Updated 6 months ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆56Updated last year
• kordastilab / ImmunoCluster
  ☆27Updated 4 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆46Updated this week
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• BaderLab / Tempora
  Pathway-based trajectory inference method for time-series scRNAseq data
  ☆25Updated 4 years ago
• wgmao / PLIER
  Pathway-Level Information Extractor (PLIER): a generative model for gene expression data
  ☆53Updated 8 months ago
• korsunskylab / rcna
  R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)
  ☆15Updated last year
• xinhe-lab / ctwas
  package for the causal TWAS project
  ☆43Updated this week
• neurogenomics / MAGMA_Celltyping
  Find causal cell-types underlying complex trait genetics
  ☆84Updated 2 months ago
• Kyoko-wtnb / FUMA_scRNA_data
  Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)
  ☆23Updated 5 years ago
• MD-Anderson-Bioinformatics / BatchEffectsPackage
  The MBatch R package and Docker image are designed to help assess and correct for batch effects.
  ☆16Updated 11 months ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆38Updated 2 years ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆37Updated 2 years ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆47Updated last year
• thewonlab / H-MAGMA
  ☆32Updated last year
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• perslab / CELLEX
  CELLEX (CELL-type EXpression-specificity)
  ☆41Updated last year
• wesleycrouse / bmediatR
  Bayesian model selection approach for mediation
  ☆12Updated 2 years ago
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆44Updated 6 months ago
• plger / pipeComp
  A R framework for pipeline benchmarking, with application to single-cell RNAseq
  ☆41Updated 3 years ago