labsquare / cutevariantLinks
A standalone and free application to explore genetics variations from VCF file
☆107Updated last year
Alternatives and similar repositories for cutevariant
Users that are interested in cutevariant are comparing it to the libraries listed below
Sorting:
- An extensible python-based genomics visualization engine☆145Updated 2 years ago
- TIDDIT - structural variant calling☆77Updated last week
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆56Updated 2 weeks ago
- Efficiently read and write sequencing data from Python☆68Updated 2 months ago
- cDNA read preprocessing☆81Updated last year
- Query language for filtering SAM/BAM reads☆31Updated last year
- structural variant database software☆47Updated 2 months ago
- simple viewer for variant call format using htslib☆32Updated 8 years ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆47Updated last year
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆76Updated last month
- vembrane filters VCF records using python expressions☆67Updated last week
- A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants☆47Updated 8 years ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆87Updated last week
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆131Updated 2 months ago
- A collection of reusable WDL tasks. Category:Other☆88Updated last week
- Transcript versions for HGVS libraries☆33Updated last month
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated last month
- Per-base per-nucleotide depth analysis☆141Updated last week
- (WIP) best-practices workflow for rare disease☆62Updated last year
- NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.☆65Updated last week
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago
- for visual evaluation of read support for structural variation☆55Updated last year
- SQL-like query language for the SAM/BAM file format☆29Updated 2 years ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- Generic human DNA variant annotation pipeline☆59Updated last year
- Short-read and long-read sequencing tools for diagnostics☆172Updated last week
- Variant Interpretation Pipeline☆45Updated this week
- VCF visualization interface☆175Updated this week
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated last year
- 🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format …☆44Updated 4 months ago