A standalone and free application to explore genetics variations from VCF file
☆109Mar 31, 2026Updated 7 months ago
Alternatives and similar repositories for cutevariant
Users that are interested in cutevariant are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A customizable genetic variants file format converter.☆11May 22, 2026Updated 5 months ago
- Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery☆13Sep 10, 2026Updated last month
- simple viewer for variant call format using htslib☆33Jan 17, 2017Updated 9 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 7 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated 2 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 5 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- A tool kit to manage many variant on desktop computer☆13Jan 13, 2026Updated 9 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Mar 29, 2023Updated 3 years ago
- Toolkit for calling structural variants using short or long reads☆120Updated this week
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 9 years ago
- Convert vcf in parquet☆32Jan 23, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Quality of life improvements for Bioinformatics in Python.☆36Sep 15, 2026Updated last month
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Feb 20, 2026Updated 8 months ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- python plotly Circos from VCF☆43Jun 20, 2024Updated 2 years ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 6 years ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated 2 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- ☆11Aug 29, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Per-base per-nucleotide depth analysis☆153Updated this week
- Generate an enhanced VCF files from ClinVar XML Full releases☆18Jul 21, 2026Updated 3 months ago
- using all the bits for echt rapid variant annotation and filtering☆166Jul 22, 2026Updated 3 months ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Jul 19, 2021Updated 5 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 5 years ago
- structural variant database software☆50Updated this week
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆20Dec 8, 2020Updated 5 years ago
- Variant catalogue pipeline☆26Jan 30, 2026Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- expressions on VCFs☆95Sep 25, 2026Updated last month
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 5 years ago
- vembrane filters, sorts, and transforms VCF records using python expressions☆71Updated this week
- indel haplotype visualization on the command line from BAM files☆12Mar 12, 2014Updated 12 years ago
- PREFACE -- PREdict FetAl ComponEnt☆16Oct 27, 2026Updated last week
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Sample Contamination Estimate from VCF☆21Oct 23, 2026Updated last week