Alternatives and similar repositories for cutevariant

Users that are interested in cutevariant are comparing it to the libraries listed below

• nspies / genomeview
  An extensible python-based genomics visualization engine
  ☆146Updated 2 years ago
• Genotek / ClassifyCNV
  ClassifyCNV: a tool for clinical annotation of copy-number variants
  ☆66Updated 2 years ago
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆76Updated 5 months ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆64Updated this week
• labsquare / CutePeaks
  CutePeaks is a standalone Sanger trace viewer steered by a modern and user-friendly UI.
  ☆45Updated 3 months ago
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆138Updated last month
• imgag / ngs-bits
  Short-read and long-read sequencing tools for diagnostics
  ☆165Updated this week
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆33Updated last month
• brentp / rare-disease-wf
  (WIP) best-practices workflow for rare disease
  ☆62Updated last year
• sigven / gvanno
  Generic human DNA variant annotation pipeline
  ☆58Updated last year
• Kingsford-Group / scallop
  Scallop is a reference-based transcriptome assembler for RNA-seq
  ☆90Updated 4 years ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated last year
• snakemake-workflows / dna-seq-varlociraptor
  A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …
  ☆86Updated this week
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆84Updated last month
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated last month
• AndersenLab / VCF-kit
  VCF-kit: Assorted utilities for the variant call format
  ☆130Updated 2 months ago
• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆73Updated 3 years ago
• DiltheyLab / HLA-LA
  Fast HLA type inference from whole-genome data
  ☆137Updated 5 months ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated last month
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆47Updated last year
• RKMlab / perf
  PERF is an Exhaustive Repeat Finder
  ☆34Updated 4 years ago
• NCBI-Hackathons / TheHumanPangenome
  A Strategy for Building and Using a Human Reference Pangenome
  ☆71Updated 5 years ago
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆54Updated last year
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 3 years ago
• nanoporetech / katuali
  Analysis pipelines from Oxford Nanopore Technologies' Research Division
  ☆50Updated 4 years ago
• sigven / cpsr
  Cancer Predisposition Sequencing Reporter (CPSR)
  ☆61Updated last week
• varfish-org / varfish-server
  VarFish: comprehensive DNA variant analysis for diagnostics and research
  ☆48Updated this week
• epi2me-labs / pychopper
  cDNA read preprocessing
  ☆78Updated last year
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆129Updated 2 years ago
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆66Updated 3 weeks ago