Alternatives and similar repositories for cutevariant

Users that are interested in cutevariant are comparing it to the libraries listed below

• nspies / genomeview
  An extensible python-based genomics visualization engine
  ☆146Updated 2 years ago
• Helix-Research-Lab / PGxPOP
  PGxPOP
  ☆17Updated 2 years ago
• ncsa / NEAT
  NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.
  ☆63Updated last week
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆47Updated last year
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆77Updated 6 months ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated 2 months ago
• Genotek / ClassifyCNV
  ClassifyCNV: a tool for clinical annotation of copy-number variants
  ☆67Updated 2 years ago
• DiltheyLab / HLA-LA
  Fast HLA type inference from whole-genome data
  ☆138Updated 6 months ago
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆55Updated last year
• bihealth / vcfpy
  Python 3 library with good support for both reading and writing VCF
  ☆109Updated 3 weeks ago
• epi2me-labs / pychopper
  cDNA read preprocessing
  ☆78Updated last year
• stjudecloud / wdldoc
  Create WDL documentation using Markdown.
  ☆28Updated last month
• HKU-BAL / ClairS-TO
  ClairS-TO - a deep-learning method for tumor-only somatic variant calling
  ☆70Updated last week
• nanoporetech / katuali
  Analysis pipelines from Oxford Nanopore Technologies' Research Division
  ☆50Updated 5 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆148Updated last week
• snakemake-workflows / dna-seq-varlociraptor
  A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …
  ☆86Updated last week
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆87Updated last week
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated last year
• Illumina / akt
  Ancestry and Kinship Tools
  ☆70Updated 2 years ago
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆35Updated 8 years ago
• ultimatesource / denovogear
  A program to detect denovo-variants using next-generation sequencing data.
  ☆54Updated 5 years ago
• yjx1217 / simuG
  simuG: a general-purpose genome simulator
  ☆96Updated 4 months ago
• J35P312 / SVDB
  structural variant database software
  ☆46Updated last week
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆67Updated last week
• molgenis / vip
  Variant Interpretation Pipeline
  ☆43Updated 2 weeks ago
• genotoul-bioinfo / dgenies
  Dotplot large Genomes in an Interactive, Efficient and Simple way
  ☆108Updated 2 weeks ago
• Illumina / Polaris
  Data and information about the Polaris study
  ☆53Updated 5 years ago
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 3 years ago
• broadinstitute / viral-pipelines
  viral-ngs: complete pipelines
  ☆66Updated last week
• labsquare / CutePeaks
  CutePeaks is a standalone Sanger trace viewer steered by a modern and user-friendly UI.
  ☆45Updated 3 months ago