labsquare / cutevariant
A standalone and free application to explore genetics variations from VCF file
☆105Updated 11 months ago
Alternatives and similar repositories for cutevariant:
Users that are interested in cutevariant are comparing it to the libraries listed below
- An extensible python-based genomics visualization engine☆144Updated last year
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆119Updated last year
- using all the bits for echt rapid variant annotation and filtering☆149Updated last week
- Technology agnostic long read analysis pipeline for transcriptomes☆141Updated last year
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆126Updated last year
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Fast multi-line FASTA/Q reader in several programming languages☆175Updated 3 years ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated last month
- Gene fusion detection and visualization☆122Updated 3 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆144Updated last year
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆197Updated last week
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆161Updated this week
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆92Updated 7 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Tools for plotting methylation data in various ways☆144Updated last week
- ☆89Updated 2 months ago
- Jasmine: SV Merging Across Samples☆208Updated 3 months ago
- cDNA read preprocessing☆65Updated 8 months ago
- Fast HLA type inference from whole-genome data☆135Updated 3 months ago
- A Python package for pharmacogenomics (PGx) research☆68Updated last month
- Hierarchical Alignment Format☆167Updated 3 months ago
- NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design☆57Updated last year
- Annotation and Ranking of Structural Variation☆247Updated 3 weeks ago
- parallelized blat with multi-threads support☆53Updated 2 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆98Updated last month
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆61Updated last year
- SV detection tool for nanopore sequence reads☆90Updated this week
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆159Updated 7 months ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆141Updated last month