a2iEditing / RNAEditingIndexerLinks
A tool for the calculation of RNA-editing index for RNA seq data
☆45Updated 3 weeks ago
Alternatives and similar repositories for RNAEditingIndexer
Users that are interested in RNAEditingIndexer are comparing it to the libraries listed below
Sorting:
- ☆59Updated 4 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 4 months ago
- ☆49Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated last month
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- RNA editing quantification in deep transcriptome data☆15Updated 4 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆77Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- RNA editing tests☆17Updated 5 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆81Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated 2 weeks ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 9 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- ☆72Updated 2 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 8 months ago
- A list of alternative splicing analysis resources☆46Updated 7 months ago
- ☆63Updated 2 months ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆29Updated 2 weeks ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆74Updated last month
- ☆21Updated last month
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆79Updated 5 months ago
- Publication quality NGS track plotting☆115Updated last month
- ☆81Updated 7 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆111Updated last year
- Tutorial Website☆60Updated 4 years ago