a2iEditing / RNAEditingIndexer
A tool for the calculation of RNA-editing index for RNA seq data
☆39Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for RNAEditingIndexer
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆36Updated 2 years ago
- ☆53Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆35Updated 3 years ago
- RNA editing quantification in deep transcriptome data☆15Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆60Updated 2 weeks ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆42Updated 7 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- Tutorial Website☆53Updated 3 years ago
- SNP-free RNA editing Identification Toolkit☆44Updated 10 months ago
- Estimate locus specific human LINE-1 expression.☆31Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 8 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆62Updated 3 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆78Updated 3 months ago
- tools to find circRNAs in RNA-seq data☆40Updated 6 years ago
- Detecting intron retention from RNA-Seq experiments☆53Updated 3 months ago
- A list of alternative splicing analysis resources☆37Updated 3 weeks ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆24Updated 2 months ago
- Full-length transcriptome splicing and mutation analysis☆73Updated 4 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆50Updated last year
- ☆37Updated last year
- RNA editing tests☆16Updated 4 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆45Updated 10 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆72Updated 3 years ago
- release version☆47Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆72Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆65Updated 2 months ago
- ☆47Updated 3 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated 5 months ago
- Software for Quantifying Interspersed Repeat Expression☆49Updated 2 years ago
- Burden testing against public controls☆50Updated 8 months ago