Alternatives and similar repositories for LMAT:

Users that are interested in LMAT are comparing it to the libraries listed below

• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated 3 weeks ago
• rrwick / Catpac
  a Contig Alignment Tool for Pairwise Assembly Comparison
  ☆13Updated 5 years ago
• hallamlab / metapathways2
  MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds
  ☆33Updated 9 years ago
• linsalrob / mgi-adapters
  Trim adapters from MGI sequence data
  ☆10Updated last year
• Magdoll / MagPhase
  Phasing for metagenomics using PacBio long reads
  ☆17Updated 3 years ago
• HKU-BAL / MegaGTA
  HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs
  ☆17Updated 8 years ago
• anuradhawick / MetaBCC-LR
  Reference-free Binning of Metagenomics Long Reads using Coverage and Composition
  ☆20Updated 7 months ago
• hzi-bifo / Haploflow
  ☆30Updated last year
• dvdylus / read2tree
  ☆20Updated 3 years ago
• donovan-h-parks / biolib
  Python package for common tasks in bioinformatic.
  ☆13Updated last year
• thegenemyers / ONEcode
  1-code framework: docs, C-library, and tools
  ☆16Updated 2 months ago
• karel-brinda / MiniPhy
  Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]
  ☆29Updated 2 weeks ago
• mjsull / chromatiblock
  Colinear block visualisation tool
  ☆30Updated last year
• functional-dark-side / agnostos-wf
  ☆45Updated last year
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆36Updated last month
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆50Updated last week
• nluhmann / BlastFrost
  ☆45Updated 3 years ago
• BeatsonLab-MicrobialGenomics / micropipe
  A pipeline for high-quality bacterial genome construction using ONT sequencing
  ☆39Updated 2 years ago
• ku-cbd / PhageBoost
  Rapid discovery of novel prophages using biological feature engineering and machine learning
  ☆37Updated 3 months ago
• motu-tool / fetchMGs.pl
  ☆16Updated 4 years ago
• Gardner-BinfLab / deltaBS
  Quantifying the significance of genetic variation using probabilistic profile-based methods.
  ☆19Updated 3 years ago
• mourisl / centrifuger
  Classifier for metagenomic sequences using FM-index with run-block compressed BWT.
  ☆56Updated last month
• JensUweUlrich / Taxor
  Fast and space-efficient taxonomic classification of long reads
  ☆43Updated last month
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆29Updated 5 years ago
• chrisquince / STRONG
  Strain Resolution ON Graphs
  ☆47Updated last year
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆26Updated last week
• epi2me-labs / kraken2-server
  Kraken2 Server
  ☆21Updated last year
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆85Updated 2 years ago