Alternatives and similar repositories for Population_Genetics_in_R

Users that are interested in Population_Genetics_in_R are comparing it to the libraries listed below

• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆149Updated 2 years ago
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆65Updated 2 years ago
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆102Updated 7 months ago
• thibautjombart / adegenet
  adegenet: a R package for the multivariate analysis of genetic markers
  ☆195Updated 8 months ago
• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆106Updated last year
• cooplab / Popgen_teaching_code
  ☆56Updated 3 years ago
• cooplab / Popgen_EVE102_2012
  Pdfs of slides from 2018 popgen course
  ☆36Updated 6 years ago
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆96Updated last month
• emmanuelparadis / pegas
  Population and Evolutionary Genetics Analysis System
  ☆29Updated 7 months ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆71Updated 3 weeks ago
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆77Updated 2 months ago
• thierrygosselin / radiator
  RADseq Data Exploration, Manipulation and Visualization using R
  ☆59Updated last month
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated 2 months ago
• pgugger / LandscapeGenomics
  Tutorials for bioinformatics and data analysis related to landscape genomics
  ☆29Updated 6 years ago
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 3 years ago
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆69Updated last month
• uqrmaie1 / admixtools
  ☆83Updated 4 months ago
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆125Updated last month
• YuLab-SMU / ggtreeExtra
  Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
  ☆93Updated 3 weeks ago
• bodkan / slendr
  Population genetic simulations in R 🌍
  ☆60Updated last month
• gdlc / BGLR-R
  ☆110Updated 2 months ago
• TickingClock1992 / RIdeogram
  ☆183Updated 5 years ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆36Updated last year
• andrewkern / popGenMachineLearningExamples
  simple examples of using supervised machine learning for population genetics inference
  ☆38Updated 7 years ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• bulksoil / BioProtocol
  Repo for a Microbiome Protocol
  ☆10Updated 7 years ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 8 months ago
• lch14forever / microbiomeViz
  Visualize microbiome data with black magic ggtree
  ☆68Updated 5 years ago
• VascoElbrecht / PrimerMiner
  R mased batch sequence downloader, with primer development and in silico evaluation capabilities
  ☆36Updated 11 months ago
• statdivlab / corncob
  Count Regression for Correlated Observations with the Beta-binomial
  ☆106Updated 6 months ago