Alternatives and similar repositories for Population_Genetics_in_R

Users that are interested in Population_Genetics_in_R are comparing it to the libraries listed below

• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆65Updated 2 years ago
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆150Updated last year
• pgugger / LandscapeGenomics
  Tutorials for bioinformatics and data analysis related to landscape genomics
  ☆28Updated 6 years ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 4 months ago
• emmanuelparadis / pegas
  Population and Evolutionary Genetics Analysis System
  ☆28Updated 2 months ago
• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆103Updated last year
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆101Updated 3 months ago
• cooplab / Popgen_EVE102_2012
  Pdfs of slides from 2018 popgen course
  ☆36Updated 6 years ago
• simon-ho / SydneyPhyloWorkshop
  Sydney Phylogenetics Workshop
  ☆62Updated 5 months ago
• ddarriba / jmodeltest2
  Automatically exported from code.google.com/p/jmodeltest2
  ☆79Updated 3 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆79Updated 9 months ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆59Updated 7 months ago
• tatumdmortimer / popgen-stats
  Scripts to calculate population genetics statistics
  ☆55Updated 6 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆25Updated 10 months ago
• Capblancq / RDA-landscape-genomics
  ☆31Updated 3 years ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated 2 years ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆86Updated 3 years ago
• bodkan / slendr
  Population genetic simulations in R 🌍
  ☆59Updated this week
• rapidspeciation / biodiversity_genomics_course
  biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
  ☆52Updated 4 months ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆66Updated last year
• andrewkern / popGenMachineLearningExamples
  simple examples of using supervised machine learning for population genetics inference
  ☆38Updated 7 years ago
• mfumagalli / ngsTools
  Programs to analyse NGS data for population genetics purposes
  ☆174Updated 9 months ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆57Updated this week
• BioEasy / EasyCodeML
  EasyCodeML: A visual tool for analysis of selection using CodeML
  ☆81Updated 2 years ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆35Updated last year
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆109Updated 7 months ago
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆65Updated last year
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆71Updated 2 years ago
• thibautjombart / adegenet
  adegenet: a R package for the multivariate analysis of genetic markers
  ☆191Updated 3 months ago
• TickingClock1992 / RIdeogram
  ☆174Updated 4 years ago