Alternatives and similar repositories for BGData

Users that are interested in BGData are comparing it to the libraries listed below

• QuantGen / BEDMatrix
  A matrix-like wrapper around PLINK .bed files
  ☆19Updated last year
• jchiquet / aricode
  R package for computation of (adjusted) rand-index and other such scores
  ☆27Updated last year
• seandavi / BiocPkgTools
  Computable build reports, package metadata, and download stats from the Bioconductor project
  ☆21Updated last week
• stephenturner / kgp
  1000 Genomes Project Metadata R Package
  ☆20Updated 2 years ago
• lcolladotor / biocthis
  Automate package and project setup for Bioconductor packages
  ☆54Updated 5 months ago
• vsbuffalo / gplyr
  ☆18Updated 8 years ago
• csoneson / treeclimbR
  ☆20Updated 2 months ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• stephenslab / flashr
  R package for Empirical Bayes Factor Analysis.
  ☆50Updated 9 months ago
• StoreyLab / biobroom
  Tidy up computational biology objects
  ☆50Updated 6 years ago
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆24Updated 2 years ago
• StoreyLab / lfa
  logistic factor analysis
  ☆16Updated 5 months ago
• const-ae / sparseMatrixStats
  Implementation of the matrixStats API for sparse matrices
  ☆53Updated 5 months ago
• variani / lme4qtl
  Mixed models @lme4 + custom covariances + parameter constraints
  ☆53Updated 4 years ago
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆38Updated last year
• StoreyLab / popkin
  R package to estimate kinship and FST from SNP data
  ☆21Updated 11 months ago
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆37Updated 5 months ago
• devillemereuil / QGglmm
  Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observ…
  ☆16Updated 7 months ago
• Bioconductor / S4Vectors
  Foundation of vector-like and list-like containers in Bioconductor
  ☆18Updated this week
• BgeeDB / BgeeDB_R
  Source code of the R packge BgeeDB to use data from the Bgee database
  ☆16Updated 7 months ago
• lgeistlinger / EnrichmentBrowser
  Seamless navigation through combined results of set-based and network-based enrichment analysis
  ☆21Updated this week
• lcolladotor / derfinder
  Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches
  ☆44Updated 9 months ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆43Updated last month
• ropensci / rsnps
  Wrapper to a number of SNP web APIs
  ☆55Updated last year
• stephens999 / ashr
  An R package for adaptive shrinkage
  ☆84Updated last month
• Bioconductor / bioc_git_transition
  This python package is for transitioning bioconductor from SVN to git
  ☆14Updated 2 years ago
• seandavi / wdlRunR
  Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources
  ☆34Updated 3 years ago
• PeteHaitch / DelayedMatrixStats
  A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package
  ☆15Updated 5 months ago
• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆16Updated 2 months ago
• federicomarini / pcaExplorer
  pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
  ☆56Updated 4 months ago