A Suite of Packages for Analysis of Big Genomic Data
☆34Jan 20, 2025Updated last year
Alternatives and similar repositories for BGData
Users that are interested in BGData are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A matrix-like wrapper around PLINK .bed files☆18Sep 6, 2024Updated 2 years ago
- A method to detect polygenic adaptation in an admixture graph☆12Feb 22, 2018Updated 8 years ago
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- Knockoff-based analysis of GWAS summary statistics data☆11Updated this week
- Forward-time simulation in Python using fwdpp☆34Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆11Sep 17, 2020Updated 6 years ago
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15May 8, 2026Updated 5 months ago
- ☆10Apr 30, 2019Updated 7 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 3 years ago
- Wrapper for MUMPS Library☆10May 28, 2026Updated 5 months ago
- Model-based clustering package for mixed data☆13May 21, 2026Updated 5 months ago
- Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting …☆14May 28, 2014Updated 12 years ago
- Statistical GENetics Input/Output Functions☆19Feb 20, 2025Updated last year
- R package with Classes and Methods for Fast Memory-Efficient Boolean Selections☆13May 6, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A collection of Rfast2 functions for data analysis. Note 1: The vast majority of the functions accept matrices only, not data.frames. N…☆43Mar 5, 2026Updated 7 months ago
- Non Metric Space ( Approximate ) Library in R☆12Feb 2, 2023Updated 3 years ago
- Vintage Sparse PCA for Semi-Parametric Network Analysis☆27Jun 15, 2026Updated 4 months ago
- Fast computation of Distance Correlation and Distance Covariance in R☆10Sep 27, 2023Updated 3 years ago
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆16Sep 12, 2025Updated last year
- An R factor backed by a raw vector rather than an integer vector.☆11Sep 6, 2021Updated 5 years ago
- Sparse matrix format with data on disk☆11Mar 23, 2026Updated 7 months ago
- Software for linkage disequilibrium graphical models☆18Apr 6, 2025Updated last year
- Fast EM algorithm for a Probabilistic PCA model for Genotype data☆21Jan 14, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 7 years ago
- R interface for OSQP☆16Feb 28, 2026Updated 8 months ago
- R package for multiblock analyses☆19Oct 21, 2026Updated last week
- Analysis of inference methods on standard population models☆25Dec 3, 2021Updated 4 years ago
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Jun 2, 2021Updated 5 years ago
- Simple Python program to perform codon optimization or heterology calculations.☆12Apr 13, 2021Updated 5 years ago
- A crate for working with genomics chain files.☆15Jul 20, 2026Updated 3 months ago
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 7 years ago
- ☆60May 12, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An R package for multivariate adaptive shrinkage.☆102Nov 7, 2024Updated last year
- Short scripts for converting genetic data between formats.☆31Nov 11, 2022Updated 3 years ago
- Fast glm fitting via RcppEigen☆62Aug 26, 2026Updated 2 months ago
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 5 years ago
- ☆119Oct 1, 2026Updated 3 weeks ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- R package to estimate kinship and FST from SNP data☆21Jan 27, 2026Updated 9 months ago