georgebusby / admixture_in_africaLinks
analysis and plotting code for "Admixture into and within Africa" by George Busby et al 2016 (eLife)
☆12Updated 9 years ago
Alternatives and similar repositories for admixture_in_africa
Users that are interested in admixture_in_africa are comparing it to the libraries listed below
Sorting:
- ☆18Updated last year
- Perform GWAS with gemma in a simple pipeline☆27Updated 8 months ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 3 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 3 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- A set of tools for modelling ancestry patterns along the genome.☆23Updated 2 weeks ago
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆23Updated 2 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆19Updated 3 years ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Updated 3 months ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆94Updated 3 years ago
- Handy genetics-related R scripts☆32Updated 6 years ago
- Short scripts for converting genetic data between formats.☆30Updated 3 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆65Updated 2 months ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆29Updated 6 years ago
- Module for analysing admixture graphs☆29Updated 7 years ago
- Experimental EIGENSOFT performance improvements.☆21Updated 11 years ago
- Genomic Annotation in Livestock for positional candidate LOci☆13Updated 4 years ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆42Updated 2 years ago
- ☆17Updated 10 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆39Updated 9 months ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆55Updated 4 months ago
- QTL mapping with binmap data☆18Updated 6 years ago
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Updated 6 years ago
- https://filippob.github.io/introduction_to_gwas/☆22Updated 6 months ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- A Toolset for Chromosome X-Wide Association Studies☆12Updated 7 years ago
- Methods for examining PCA locally along the genome.☆86Updated last year
- Tutorial on using popular tools for learning about population history☆53Updated 7 years ago