cultivarium / MicrobeMod
A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
☆44Updated last month
Alternatives and similar repositories for MicrobeMod:
Users that are interested in MicrobeMod are comparing it to the libraries listed below
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆56Updated this week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆87Updated this week
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆53Updated 3 weeks ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 9 months ago
- tools for assessing the accuracy of genome assemblies☆34Updated 9 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆47Updated 6 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 9 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆51Updated 8 months ago
- A toolkit for prokaryotic comparative genomics☆38Updated 2 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆51Updated last month
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆71Updated 4 months ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆42Updated last year
- IslandPath standalone software☆31Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆54Updated 4 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Bifrost graph gene caller.☆91Updated 3 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆38Updated last month
- whole genome MLST analysis☆40Updated 8 months ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆24Updated this week
- Split Kmer Analysis☆63Updated 2 years ago
- Bacterial GWAS analysis☆34Updated last month