Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
☆68Sep 5, 2024Updated last year
Alternatives and similar repositories for metagenomics_summer_school
Users that are interested in metagenomics_summer_school are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆13Feb 17, 2025Updated last year
- ☆20Mar 11, 2024Updated 2 years ago
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆61Sep 23, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆24Dec 5, 2018Updated 7 years ago
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 2 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆173Jul 20, 2026Updated last week
- A method of assessing sequence complexity based on kmer frequencies☆33Apr 9, 2018Updated 8 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆335Updated this week
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- Variational autoencoder for metagenomic binning☆330Apr 27, 2026Updated 3 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆39Apr 9, 2026Updated 3 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆110Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Build a map of genes present across a set of microbial genomes☆18Jan 23, 2026Updated 6 months ago
- ☆14Jul 21, 2026Updated last week
- Woltka: a versatile meta'omic data classifier☆80Sep 8, 2025Updated 10 months ago
- Population genomics from metagenomes☆13Sep 1, 2024Updated last year
- ☆22Oct 9, 2025Updated 9 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated last month
- A Nextflow full-length 16S profiling pipeline for ONT reads☆25Nov 16, 2023Updated 2 years ago
- A general metagenomics data mining system focus on robust microbiome research☆61Mar 3, 2026Updated 4 months ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆272May 13, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Introduction to Ancient Metagenomics Book☆16Jul 8, 2026Updated 3 weeks ago
- ☆63Jul 16, 2026Updated last week
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Aug 2, 2022Updated 3 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- This repository contains all CWL descriptions of the MGnify pipeline version 5.0.☆24Apr 21, 2026Updated 3 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆37Oct 26, 2020Updated 5 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Jun 3, 2026Updated last month
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆460Feb 13, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ATLAS - Three commands to start analyzing your metagenome data☆406May 28, 2026Updated 2 months ago
- MAG Circularization Method☆33Nov 4, 2025Updated 8 months ago
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆180Jul 17, 2026Updated last week
- Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.☆34Jun 18, 2023Updated 3 years ago
- DAS Tool☆177May 2, 2024Updated 2 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆152Updated this week