GenomicsAotearoa / metagenomics_summer_school
Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
☆53Updated 5 months ago
Alternatives and similar repositories for metagenomics_summer_school:
Users that are interested in metagenomics_summer_school are comparing it to the libraries listed below
- Metagenomics-related extended functionalities to samtools☆19Updated last year
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆45Updated 2 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- Metagenomics Workshop☆28Updated 8 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 4 months ago
- ☆41Updated 4 years ago
- A microbiome analysis toolkit for R☆21Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- An R package designed for drawing gene arrow maps☆43Updated this week
- BEAV: Bacterial Element Annotation reVamped☆60Updated 3 months ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 3 months ago
- ☆23Updated 6 years ago
- Working with the outputs of sourmash in R☆26Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago
- Improvement of metagenome-assembled genomes☆51Updated 4 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆13Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.