GenomicsAotearoa / metagenomics_summer_schoolLinks
Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
☆64Updated last year
Alternatives and similar repositories for metagenomics_summer_school
Users that are interested in metagenomics_summer_school are comparing it to the libraries listed below
Sorting:
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆68Updated 3 weeks ago
- ☆40Updated 4 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- ☆75Updated this week
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated last week
- SHallow shOtGUN profiler☆53Updated 3 years ago
- An R package designed for drawing gene arrow maps☆88Updated last month
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆44Updated last year
- gutSMASH☆55Updated 9 months ago
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆39Updated this week
- Protein Alignment and Detection Interface☆60Updated last year
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆49Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 4 months ago
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆27Updated 8 months ago
- A package to annotate protein sequences☆59Updated 6 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated 2 months ago
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆45Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago