dinasv / CSBFinder
A Java Desktop application with a graphical user interface for the discovery of colinear syntenic blocks across thousands microbial genomes
☆29Updated last year
Alternatives and similar repositories for CSBFinder:
Users that are interested in CSBFinder are comparing it to the libraries listed below
- ☆35Updated 5 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆70Updated 5 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆26Updated 7 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆73Updated last year
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- ☆52Updated 3 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆61Updated 3 months ago
- Convert GTDB taxonomy to NCBI taxdump format☆67Updated last year
- Assign taxonomic ranks based on evolutionary divergence.☆23Updated 2 years ago
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆11Updated last year
- ☆35Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- IslandPath standalone software☆31Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆41Updated 2 weeks ago
- Pipeline to generate NGS reads from a phylogeny☆39Updated 2 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆94Updated this week
- GATB Minia assembly pipeline☆30Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- Pipeline to annotate sequences at different taxonomic levels using NCBI's taxonomy☆20Updated 11 years ago
- Improvement of metagenome-assembled genomes☆50Updated 4 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 4 years ago
- Estimate metagenomic coverage and sequence diversity☆46Updated 5 months ago
- ☆28Updated 10 months ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆42Updated 6 months ago
- Split Kmer Analysis☆63Updated 2 years ago
- ☆28Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- Phylogenetics between and within hosts at once, all along the genome.☆48Updated 3 months ago