protocols for bioinformatics data analysis
☆10Sep 22, 2020Updated 5 years ago
Alternatives and similar repositories for protocols
Users that are interested in protocols are comparing it to the libraries listed below
Sorting:
- A set of scripts for the assembly of chloroplast genomes out of whole-genome sequencing reads☆12May 2, 2019Updated 6 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 2 years ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆14Mar 15, 2023Updated 2 years ago
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆16Nov 30, 2023Updated 2 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Jan 4, 2019Updated 7 years ago
- A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the…☆17Mar 19, 2023Updated 2 years ago
- Minimum plain text representation of kmer sets☆16Jan 30, 2025Updated last year
- Code for detecting genomic island insertions in clades of microbes.☆19Sep 14, 2023Updated 2 years ago
- A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.☆19Apr 21, 2018Updated 7 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated 5 months ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25May 18, 2024Updated last year
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated last year
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 6 months ago
- Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.☆32Nov 19, 2025Updated 3 months ago
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆65Feb 1, 2025Updated last year
- An attempt to help anyone interested in using Perl for Bioinformatics☆35Dec 4, 2019Updated 6 years ago
- This is the website for the Language Technology and Data Analysis Laboratory (LADAL) which is part of the School of Languages and Culture…☆14Jan 29, 2025Updated last year
- ☆13Jan 26, 2025Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- ☆11Feb 16, 2021Updated 5 years ago
- A web application framework for analysis and visualization of High throughput Sequencing metagenomic data☆10Nov 21, 2016Updated 9 years ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Feb 6, 2018Updated 8 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated last week
- satMiner: A Toolkit to NGS satellite DNA mining and analysis☆11Mar 10, 2022Updated 3 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Dec 24, 2025Updated 2 months ago
- Multiple Bacteria Genome Compressor (MBGC)☆11Feb 20, 2026Updated 2 weeks ago
- Create three instances in Oracle Cloud Infrastructure using Terraform 0.12 dynamic blocks☆11May 24, 2020Updated 5 years ago
- rspatial website using terra☆13Feb 14, 2025Updated last year
- MICROPHERRET: MICRObial PHEnotypic tRait ClassifieR using machine lEarning Techniques☆12Dec 16, 2025Updated 2 months ago
- ☆12Feb 16, 2025Updated last year
- Draw pan- and core-genome curves from proteinortho output☆10Oct 26, 2023Updated 2 years ago
- R语言代谢组学数据分析☆12Feb 29, 2016Updated 10 years ago
- ☆11Aug 20, 2019Updated 6 years ago
- OLD repo for RLadies Sydney blog☆11Mar 24, 2025Updated 11 months ago
- detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity☆12May 25, 2023Updated 2 years ago
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago