☆12May 13, 2025Updated last year
Alternatives and similar repositories for MEDIPIPE
Users that are interested in MEDIPIPE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collection of fragmentomic analysis scripts☆14Jul 3, 2024Updated 2 years ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆20Updated this week
- Deconvolve individual immune cell types from cancer data☆10Apr 29, 2017Updated 9 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆29Oct 1, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆26Apr 5, 2023Updated 3 years ago
- Immune deconvolution of publicly available TCGA expression data☆11Jan 28, 2019Updated 7 years ago
- R package implementing affinity propagation clustering along with various utilities☆12Sep 9, 2025Updated last year
- Workflow for Sequenza, cellularity and ploidy☆28Jun 11, 2026Updated 4 months ago
- ☆15Apr 20, 2023Updated 3 years ago
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 6 years ago
- Core utilities for single-cell RNA-seq☆13Jun 16, 2026Updated 4 months ago
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆13Aug 4, 2020Updated 6 years ago
- A set of scripts and functions for analyzing MeDIP-seq datasets☆16Feb 3, 2026Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- Epigenomic enrichment analysis of age-related genomic regions☆17Jun 4, 2026Updated 4 months ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 7 years ago
- Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.☆54Oct 12, 2026Updated last week
- I implement RBM, DBN, Multi-modal DBN with Python and the majority of matrix operations are executed on GPU. In this project I employ Cud…☆18Jun 4, 2015Updated 11 years ago
- DNA copy number detection from off-target sequence data☆34May 17, 2018Updated 8 years ago
- Connectivity Map analysis in MATLAB☆52Dec 10, 2021Updated 4 years ago
- Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data☆18Nov 26, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11Oct 7, 2026Updated last week
- python stuff I use☆21Feb 16, 2026Updated 8 months ago
- Quantitation and visualization of differential alternative splicing events☆11May 2, 2023Updated 3 years ago
- Implementation of Deep Boltzmann Machines for text-mining☆19Jun 15, 2016Updated 10 years ago
- ☆67Aug 14, 2020Updated 6 years ago
- R scripts and executable binder for blog post about using Purrr for mapping over ML hyperparameters☆11May 15, 2019Updated 7 years ago
- RNA Fusion Detection and Quantification☆18Oct 31, 2018Updated 7 years ago
- R library that creates compiled functions from simple tensor expressions☆13Sep 2, 2021Updated 5 years ago
- KaryoScope: rapid, alignment-free sequence annotation for the pangenome era☆28Sep 14, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆45Sep 30, 2026Updated 2 weeks ago
- Tensorflow Implementation of RBM☆13May 4, 2017Updated 9 years ago
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆45Jun 29, 2026Updated 3 months ago
- ☆10Jul 16, 2021Updated 5 years ago
- CNV detection tool for targeted NGS panel data☆17Feb 28, 2022Updated 4 years ago
- A factor analysis package☆110May 8, 2012Updated 14 years ago
- Wrappers around NGS peak callers to both call peaks and run IDR☆11Aug 2, 2013Updated 13 years ago