cBioPortal / datahub-study-curation-tools
Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.
☆18Updated this week
Related projects ⓘ
Alternatives and complementary repositories for datahub-study-curation-tools
- Explore the cancer relevance of your gene list☆49Updated 2 months ago
- ☆40Updated 6 years ago
- Development repository for the multiMiR database's R API☆20Updated 2 months ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 3 years ago
- ☆33Updated 5 years ago
- This repository contains course materials from JAX-BD2K workshop.☆31Updated 5 years ago
- ☆37Updated 4 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆41Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- Analysis for svaseq paper☆19Updated 10 years ago
- Platform for Oncogenomic Reporting and Interpretation (PORI)☆31Updated 4 months ago
- ☆20Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆42Updated 3 years ago
- ☆54Updated 2 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated last year
- Processing of single cell RNAseq data for the recovery of TCRs in python☆26Updated 3 years ago
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆25Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- XEnograft Visualization & Analysis☆9Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated 5 months ago
- Identify and correct invalid gene symbols☆55Updated this week
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆44Updated last week
- ☆46Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆15Updated 10 months ago
- Analysis notebooks and data for AML hierarchies paper☆15Updated last year
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆22Updated last year
- Figure depicting the breadth of multimodal scRNA-seq technologies☆15Updated 5 years ago