cBioPortal / datahub-study-curation-tools
Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.
☆18Updated last month
Alternatives and similar repositories for datahub-study-curation-tools:
Users that are interested in datahub-study-curation-tools are comparing it to the libraries listed below
- Explore the cancer relevance of your gene list☆49Updated 4 months ago
- ☆40Updated 6 years ago
- Explore and download data from the recount3 project☆31Updated last month
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated 2 weeks ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆43Updated last year
- ☆29Updated 6 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- Development repository for the multiMiR database's R API☆20Updated 5 months ago
- Analysis for svaseq paper☆19Updated 10 years ago
- Analysis notebooks and data for AML hierarchies paper☆15Updated last year
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆29Updated 4 years ago
- GLASS consortium☆38Updated 4 years ago
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆18Updated 5 years ago
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆13Updated 2 years ago
- Course Materials for Genomics Data Mining☆22Updated this week
- An R package for predicting HR deficiency from mutation contexts☆27Updated last year
- Cancer Dependency Map package☆26Updated 5 months ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆42Updated 4 years ago
- ☆56Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆23Updated 7 months ago
- ☆59Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Overview of GDC Harmonization Workflows☆27Updated last year
- XEnograft Visualization & Analysis☆11Updated 2 months ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆25Updated 4 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆17Updated 2 months ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆41Updated 2 months ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated last month