dvitale199 / GenoTools
GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for computational biology and genetics research.
☆23Updated last week
Related projects: ⓘ
- Source code of FUMA GWAS web application☆52Updated 10 months ago
- Main repository for Drews et al. (Nature, 2022)☆37Updated last year
- Extracting disease-specific genomic coordinates from GWAS catalog☆19Updated 4 years ago
- ☆24Updated 3 years ago
- A tool to plot significant regions of GWAS☆28Updated last year
- A framework to infer mutational signatures in cancer over time☆53Updated 5 years ago
- MutSig2CV from Lawrence et al. 2014☆29Updated 4 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆10Updated 2 years ago
- Statistical fine-mapping pipeline in FinnGen☆24Updated last week
- ☆22Updated 6 months ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆29Updated 2 months ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆19Updated 6 years ago
- ☆42Updated 3 weeks ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆28Updated 2 years ago
- ☆40Updated 6 years ago
- Software for estimating correlation of trait effect sizes across populations☆37Updated last year
- Phenome Exome Association and Correlation Of Key phenotypes☆24Updated 3 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆43Updated last year
- An R package for creating mirrored Manhattan plots☆17Updated last year
- Cross-population fine-mapping☆21Updated 4 months ago
- Script used to identify de novo variants from sequencing data.☆12Updated 7 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆28Updated 2 years ago
- A multi-ancestry polygenic risk score approach☆12Updated 2 months ago
- ☆16Updated 2 years ago
- ☆61Updated 2 years ago
- ☆36Updated 4 years ago
- A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.☆37Updated 8 months ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆39Updated 3 years ago
- Base-wise aggregation and functional prediction for human non-coding regulatory variants☆15Updated 9 months ago
- GWAS genetics Fine-mapping method☆15Updated 4 months ago