GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for computational biology and genetics research.
☆35Feb 13, 2026Updated 2 months ago
Alternatives and similar repositories for GenoTools
Users that are interested in GenoTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data☆33Jun 17, 2025Updated 9 months ago
- Core pipeline of GenoML☆16Aug 3, 2020Updated 5 years ago
- ☆14Dec 2, 2022Updated 3 years ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Mar 16, 2026Updated 3 weeks ago
- Container class to represent genomic locations and support genomic analysis☆26Updated this week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆16Dec 28, 2022Updated 3 years ago
- PRS pipeline using PRS_CS☆15Oct 21, 2025Updated 5 months ago
- Fork of ricopili for development of pipeline for family-based data☆19Jun 22, 2025Updated 9 months ago
- An R package for Standardized Summary, Annotation, Comparison, and Visualization of CNV, CNVR and ROH☆15Oct 17, 2021Updated 4 years ago
- ☆16Apr 10, 2024Updated 2 years ago
- Data and code for the Effector index☆14Oct 13, 2020Updated 5 years ago
- GTM and t-SNE classification and clustering of 1000 Genomes Project populations☆13Feb 18, 2019Updated 7 years ago
- Python module for genetic analyses☆18Mar 14, 2026Updated 3 weeks ago
- Applying polygenic scores (PGS) on imputed genotypes☆33Oct 28, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- fast bgen parser for python☆16Mar 24, 2026Updated 2 weeks ago
- Open Targets python framework for post-GWAS analysis☆54Updated this week
- A list of awesome tools for complex trait genetics.☆85Jan 28, 2025Updated last year
- Learn and validate subtypes from multiple traits☆20Jun 15, 2021Updated 4 years ago
- Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF☆162Feb 26, 2026Updated last month
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 7 years ago
- A protocol to estimate global ancestry starting from raw Illumina data☆11Oct 16, 2019Updated 6 years ago
- Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform☆78Jan 12, 2026Updated 3 months ago
- Calling disease-related genes☆16Apr 1, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- 💊🧬 PharMe - Pharmaceutical insights tailored to your personal genome☆23Aug 20, 2025Updated 7 months ago
- Docker Image for Michigan Imputation Server☆18Oct 12, 2021Updated 4 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Apr 28, 2025Updated 11 months ago
- A structural variant filtering and prioritization tool for long-read sequencing data☆38Updated this week
- A GPU version of SAIGE for full GRM GWAS analysis☆19Aug 6, 2025Updated 8 months ago
- Alignability testing and integration of single-cell data☆21Feb 29, 2024Updated 2 years ago
- ☆13Sep 7, 2022Updated 3 years ago
- Quality control steps for GWAS☆26Aug 11, 2023Updated 2 years ago
- R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.☆18Feb 24, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Converting UK Biobank genome-wide genotyping data from one reference build to another☆23Jun 20, 2024Updated last year
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆33Updated this week
- Imputation steps using the Michigan or Sanger imputation server.☆16May 6, 2021Updated 4 years ago
- Python interface to the MRC IEU OpenGWAS API☆15Mar 6, 2026Updated last month
- A simple python library to identify the most likely strain from the population☆10Jan 11, 2024Updated 2 years ago
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆72Oct 10, 2024Updated last year
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆12Sep 3, 2024Updated last year