dvitale199 / GenoTools
GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for computational biology and genetics research.
☆25Updated 2 weeks ago
Alternatives and similar repositories for GenoTools:
Users that are interested in GenoTools are comparing it to the libraries listed below
- Source code of FUMA GWAS web application☆56Updated last year
- ☆40Updated 7 years ago
- ☆25Updated 4 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆50Updated last year
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- Burden testing against public controls☆50Updated 11 months ago
- Enhanced version of the FastQTL QTL mapper☆61Updated last year
- Cross-population fine-mapping☆30Updated last month
- Scripts to run mQTL analyses as described in the ARIES mQTL paper☆9Updated 8 years ago
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆61Updated last month
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 2 years ago
- Software for estimating correlation of trait effect sizes across populations☆42Updated 2 years ago
- Sequence kernel association test (SKAT)☆44Updated last year
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆22Updated 2 months ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆44Updated last year
- MutSig2CV from Lawrence et al. 2014☆30Updated 4 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆46Updated last week
- ☆46Updated 3 months ago
- PGxPOP☆16Updated 2 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆41Updated last month
- An R package for predicting HR deficiency from mutation contexts☆27Updated last year
- Analyses conducting GWAS across the UKBB diverse superpopulations☆48Updated 3 months ago
- Quality control steps for GWAS☆19Updated last year
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆22Updated 3 weeks ago
- This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GW…☆41Updated 2 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆28Updated last month
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆29Updated last year