GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for computational biology and genetics research.
☆37Oct 21, 2026Updated last week
Alternatives and similar repositories for GenoTools
Users that are interested in GenoTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Core pipeline of GenoML☆16Aug 3, 2020Updated 6 years ago
- ☆14Dec 2, 2022Updated 3 years ago
- Workflow for human mitochondria analysis☆10Nov 2, 2024Updated last year
- Fork of ricopili for development of pipeline for family-based data☆20Sep 30, 2026Updated last month
- Container class to represent genomic locations and support genomic analysis☆28Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- PRS pipeline using PRS_CS☆17Oct 6, 2026Updated 3 weeks ago
- An R package for Standardized Summary, Annotation, Comparison, and Visualization of CNV, CNVR and ROH☆16Oct 17, 2021Updated 5 years ago
- GTM and t-SNE classification and clustering of 1000 Genomes Project populations☆13Feb 18, 2019Updated 7 years ago
- ☆16Apr 10, 2024Updated 2 years ago
- Data and code for the Effector index☆14Oct 13, 2020Updated 6 years ago
- Python module for genetic analyses☆19Oct 21, 2026Updated last week
- Open Targets python framework for post-GWAS analysis☆60Updated this week
- fast bgen parser for python☆18Sep 19, 2026Updated last month
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆19Dec 28, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Statistical And Functional Fine-mApping of GWAS Risk locI (SAFFARI)☆13Sep 2, 2026Updated last month
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 8 years ago
- A list of awesome tools for complex trait genetics.☆89Jan 28, 2025Updated last year
- Learn and validate subtypes from multiple traits☆20Jun 15, 2021Updated 5 years ago
- DENTIST (Detecting Errors iN analyses of summary staTISTics) is a QC tool for summary-data-based analyses.☆30Oct 5, 2023Updated 3 years ago
- Applying polygenic scores (PGS) on imputed genotypes☆36Oct 28, 2025Updated last year
- A protocol to estimate global ancestry starting from raw Illumina data☆11Oct 16, 2019Updated 7 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆16Apr 28, 2025Updated last year
- Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF☆166Feb 26, 2026Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆20Mar 6, 2024Updated 2 years ago
- Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data☆20Mar 18, 2023Updated 3 years ago
- Docker Image for Michigan Imputation Server☆18Oct 12, 2021Updated 5 years ago
- Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform☆78Jan 12, 2026Updated 9 months ago
- ☆13Sep 7, 2022Updated 4 years ago
- Locus-to-gene scoring pipeline☆13May 11, 2026Updated 5 months ago
- A small roguelike!☆13Apr 30, 2020Updated 6 years ago
- Quality control steps for GWAS☆27Aug 11, 2023Updated 3 years ago
- Alignability testing and integration of single-cell data☆24Feb 29, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Imputation steps using the Michigan or Sanger imputation server.☆16May 6, 2021Updated 5 years ago
- A GPU version of SAIGE for full GRM GWAS analysis☆22Aug 6, 2025Updated last year
- ☆26Jan 8, 2026Updated 9 months ago
- 🥚 EnerGy Guided Diffusion for optimizing neurally exciting images☆10Dec 20, 2023Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆40Updated this week
- Communication and file format handling tools for CASIO calculators. (mirror from Gitlab)☆10Oct 23, 2026Updated last week
- 💊🧬 PharMe - Pharmaceutical insights tailored to your personal genome☆23Aug 20, 2025Updated last year