Alternatives and similar repositories for genoml2

Users that are interested in genoml2 are comparing it to the libraries listed below

• greenelab / BioBombe
  BioBombe: Sequentially compressed gene expression features enhances biological signatures
  ☆66Updated last year
• Christensen-Lab-Dartmouth / PyMethylProcess
  Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
  ☆36Updated 5 years ago
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆45Updated last year
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆55Updated 2 months ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆51Updated 2 months ago
• JanZrimec / DeepExpression
  ☆33Updated 2 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• jishnu-lab / SLIDE
  ☆27Updated last month
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆62Updated last year
• ArnovanHilten / GenNet
  Framework for Interpretable Neural Networks
  ☆108Updated 4 months ago
• bio-learn / biolearn
  Machine learning tools for biomarker analysis
  ☆65Updated last week
• BIMSBbioinfo / compgen2021
  ☆77Updated 3 years ago
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆43Updated 2 weeks ago
• kuanrongchan / STAGES
  ☆36Updated 5 months ago
• Christensen-Lab-Dartmouth / MethylNet
  Modular framework for deep learning predictions on methylation data.
  ☆54Updated 5 years ago
• MaayanLab / biojupies-plugins
  User-submitted RNA-seq data analysis tools for BioJupies.
  ☆20Updated 3 weeks ago
• krishnanlab / PyGenePlexus
  A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…
  ☆20Updated this week
• FoxoTech / methylprep
  Python-based preprocessing software for Illumina methylation arrays
  ☆38Updated last year
• biagent-dev / bia
  BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow
  ☆36Updated 11 months ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• fraenkel-lab / OmicsIntegrator2
  Prize-Collecting Steiner Forests for Interactomes
  ☆60Updated last year
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆15Updated 3 years ago
• ekernf01 / perturbation_benchmarking
  Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
  ☆19Updated 4 months ago
• viash-io / viash
  script + metadata = standalone component
  ☆43Updated 3 weeks ago
• rezacsedu / XAI-for-bioinformatics
  Explainable AI for Bioinformatics
  ☆125Updated 2 years ago
• ericminikel / genetic_support
  Refining the impact of genetic evidence on clinical success
  ☆26Updated last year
• glasgowcompbio / pyMultiOmics
  Python toolbox for multi-omics data mapping and analysis
  ☆24Updated 2 years ago
• regev-lab / interpretable-splicing-model
  Interpretable splicing model
  ☆20Updated 2 years ago
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆32Updated 4 months ago