GenoML / genoml2Links
GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data
☆33Updated 4 months ago
Alternatives and similar repositories for genoml2
Users that are interested in genoml2 are comparing it to the libraries listed below
Sorting:
- ☆149Updated 9 months ago
- Framework for Interpretable Neural Networks☆111Updated 7 months ago
- Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.☆36Updated 5 years ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆56Updated 5 months ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆91Updated this week
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Updated last year
- A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.☆42Updated this week
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆55Updated 5 months ago
- Modular framework for deep learning predictions on methylation data.☆55Updated 5 years ago
- Python-based preprocessing software for Illumina methylation arrays☆41Updated 2 years ago
- Machine learning tools for biomarker analysis☆68Updated last week
- A Python-based compendium of GPU-optimized aging clocks.☆109Updated last month
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated 2 years ago
- ☆33Updated 2 years ago
- Explainable AI for Bioinformatics☆126Updated 2 years ago
- A pipeline that accurately simulates high quality publicly cancer genomes (VCFs, CNAs and SVs).☆30Updated last month
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- ☆77Updated 4 years ago
- Deep learning based processing of Atac-seq data☆131Updated 2 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆33Updated 6 years ago
- Interpretable splicing model☆20Updated 2 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆33Updated 7 months ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆31Updated 3 months ago
- Deep representation learning for disease prediction based on microbiome data☆61Updated 2 years ago
- bioinformatics plotting and tools☆59Updated last year
- BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data☆14Updated 2 years ago
- DNA methylation-based clocks☆46Updated last year
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 5 years ago
- In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.☆20Updated 3 years ago