fast bgen parser for python
☆16Jan 7, 2026Updated 2 months ago
Alternatives and similar repositories for bgen
Users that are interested in bgen are comparing it to the libraries listed below
Sorting:
- A BGEN file format reader.☆11Jan 7, 2025Updated last year
- A BGEN file format reader.☆13Jun 17, 2024Updated last year
- Julia module to handle PLINK BED files☆11Jul 10, 2018Updated 7 years ago
- sci palettes for matplotlib/seaborn☆10Feb 14, 2022Updated 4 years ago
- Configs and descriptions of circos plots created on FUMA web application☆15Dec 10, 2017Updated 8 years ago
- A pipeline for phasing UK Biobank whole genome sequence data☆19Mar 21, 2023Updated 2 years ago
- A GPU version of SAIGE for full GRM GWAS analysis☆19Aug 6, 2025Updated 7 months ago
- Python module for genetic analyses☆17Jan 16, 2026Updated last month
- The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049☆19Jan 9, 2026Updated 2 months ago
- Connecting GWAS summary data to analytical tools☆23Mar 25, 2024Updated last year
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆29Feb 4, 2026Updated last month
- Accelerated Bayesian inference of population size history from whole genome data.☆33Sep 29, 2025Updated 5 months ago
- regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.☆255Nov 13, 2025Updated 3 months ago
- MASI Lab Implementation of PheWAS in Python☆28Nov 12, 2024Updated last year
- OpenMendel package for haplotyping and imputation☆25Oct 8, 2025Updated 5 months ago
- GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comp…☆33Feb 13, 2026Updated 3 weeks ago
- Regional association plots☆26Apr 1, 2024Updated last year
- Scalable Ultra-Sparse Bayesian PCA☆32Feb 13, 2024Updated 2 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆35Dec 5, 2025Updated 3 months ago
- A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/☆280Feb 17, 2026Updated 2 weeks ago
- A transformer model to predict pathogenic mutations☆12Jun 25, 2025Updated 8 months ago
- ☆12Aug 23, 2023Updated 2 years ago
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 9 years ago
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- Genetic Association Analysis Under Complex Survey Sampling☆13Nov 13, 2019Updated 6 years ago
- UTMOST (unified test for molecular signatures) is a method for cross-tissue gene expression imputation for transcriptome-wide association…☆44Oct 23, 2025Updated 4 months ago
- Python implementation of Spatial Analysis of Functional Enrichment (SAFE)☆46Aug 26, 2025Updated 6 months ago
- PLINK reader for Python.☆89May 12, 2025Updated 9 months ago
- liftover for python, made fast with cython☆96Oct 14, 2025Updated 4 months ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Jul 3, 2025Updated 8 months ago
- Emacs org mode export backend for beamer lectures.☆10Sep 18, 2025Updated 5 months ago
- As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-…☆44May 7, 2020Updated 5 years ago
- Heritability Estimation with high Efficiency using LD and Summary Statistics☆13Feb 14, 2024Updated 2 years ago
- Out-of-Core Principal Component Analysis☆19Dec 25, 2017Updated 8 years ago
- ☆12Sep 14, 2025Updated 5 months ago
- Spark and NumPy implementations of Newton Sketch.☆11Jul 24, 2018Updated 7 years ago
- A simple python library to identify the most likely strain from the population☆10Jan 11, 2024Updated 2 years ago
- locus R package - Large-scale variational inference for variable selection in sparse multiple-response regression☆10Jan 2, 2024Updated 2 years ago
- Generate C++ method implementations from declarations☆17Aug 5, 2025Updated 7 months ago