fast bgen parser for python
☆16May 25, 2026Updated this week
Alternatives and similar repositories for bgen
Users that are interested in bgen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A BGEN file format reader.☆12Jan 7, 2025Updated last year
- Julia module to handle PLINK BED files☆11Jul 10, 2018Updated 7 years ago
- A BGEN file format reader.☆14Jun 17, 2024Updated last year
- Python module for genetic analyses☆19Mar 14, 2026Updated 2 months ago
- sci palettes for matplotlib/seaborn☆10Feb 14, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- liftover for python, made fast with cython☆99Apr 18, 2026Updated last month
- ☆32May 7, 2026Updated 3 weeks ago
- Python interface to the MRC IEU OpenGWAS API☆15Mar 6, 2026Updated 2 months ago
- Reimplementation of SynthMorph in PyTorch☆15Feb 7, 2024Updated 2 years ago
- A simple python library to identify the most likely strain from the population☆10Jan 11, 2024Updated 2 years ago
- These are handwritten solutions of almost all exercises in "Gauge Fields, Knots and Gravity" by John Baez & Javier P. Muniain.☆13Oct 2, 2020Updated 5 years ago
- OpenMendel package for haplotyping and imputation☆25Oct 8, 2025Updated 7 months ago
- A GPU version of SAIGE for full GRM GWAS analysis☆20Aug 6, 2025Updated 9 months ago
- Repository for Short Course: Deep Learning in Omics☆17Jan 13, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆15Apr 10, 2017Updated 9 years ago
- regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.☆262Nov 13, 2025Updated 6 months ago
- A pipeline for phasing UK Biobank whole genome sequence data☆19Mar 21, 2023Updated 3 years ago
- GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comp…☆36Feb 13, 2026Updated 3 months ago
- Accelerated Bayesian inference of population size history from whole genome data.☆35Apr 6, 2026Updated last month
- Connecting GWAS summary data to analytical tools☆23Mar 25, 2024Updated 2 years ago
- Scientific Computing Benchmarks☆11Mar 13, 2020Updated 6 years ago
- Regional association plots☆27Apr 1, 2024Updated 2 years ago
- ☆11Jul 8, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- HPC Examples and Documentation for Julia☆14Feb 7, 2023Updated 3 years ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Feb 27, 2020Updated 6 years ago
- A Toolset for Chromosome X-Wide Association Studies☆13May 1, 2018Updated 8 years ago
- cEll tyPe enrIChment☆17Dec 11, 2022Updated 3 years ago
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆31Apr 15, 2026Updated last month
- slideToolkit: a free toolset for analyzing full size virtual histology slides☆11May 22, 2024Updated 2 years ago
- Tutorial files for the JuliaCon 2020 CxxWrap workshop☆14Jul 26, 2020Updated 5 years ago
- A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/☆293Apr 16, 2026Updated last month
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆36Dec 5, 2025Updated 5 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆15Jun 30, 2021Updated 4 years ago
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Jun 2, 2021Updated 4 years ago
- This project aims at providing a scalable approach to matrix multiplication, which is one of the most used step in machine learning.☆14Jan 13, 2016Updated 10 years ago
- Folding-Docking-Affinity framework for protein-ligand affinity prediction☆29Mar 20, 2025Updated last year
- MASI Lab Implementation of PheWAS in Python☆28Nov 12, 2024Updated last year
- Discovery of genetic variants with shared effect across multiple phenotypes from GWAS summary statistics☆14Oct 27, 2023Updated 2 years ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Dec 7, 2022Updated 3 years ago