fast bgen parser for python
☆18May 25, 2026Updated 2 months ago
Alternatives and similar repositories for bgen
Users that are interested in bgen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A BGEN file format reader.☆12Jan 7, 2025Updated last year
- Julia module to handle PLINK BED files☆11Jul 10, 2018Updated 8 years ago
- A BGEN file format reader.☆14Jun 17, 2024Updated 2 years ago
- Configs and descriptions of circos plots created on FUMA web application☆15Dec 10, 2017Updated 8 years ago
- The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049☆20Mar 31, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python module for genetic analyses☆19Mar 14, 2026Updated 4 months ago
- sci palettes for matplotlib/seaborn☆10Feb 14, 2022Updated 4 years ago
- ☆46May 8, 2026Updated 2 months ago
- liftover for python, made fast with cython☆100Apr 18, 2026Updated 3 months ago
- ☆32May 7, 2026Updated 2 months ago
- A pipeline for phasing UK Biobank whole genome sequence data☆19Mar 21, 2023Updated 3 years ago
- Pathway-Regularized Matrix Factorization☆12Apr 6, 2020Updated 6 years ago
- Python implementation of Spatial Analysis of Functional Enrichment (SAFE)☆46Aug 26, 2025Updated 11 months ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python interface to the MRC IEU OpenGWAS API☆16Mar 6, 2026Updated 4 months ago
- GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comp…☆37Jul 21, 2026Updated last week
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆33Jun 26, 2026Updated last month
- A simple python library to identify the most likely strain from the population☆10Jan 11, 2024Updated 2 years ago
- Analysis of similarity of HPO terms in groups of individuals☆24May 3, 2022Updated 4 years ago
- OpenMendel package for haplotyping and imputation☆25Oct 8, 2025Updated 9 months ago
- A GPU version of SAIGE for full GRM GWAS analysis☆20Aug 6, 2025Updated 11 months ago
- ☆15Apr 10, 2017Updated 9 years ago
- regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.