pjgreer / ukb-rap-tools
Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform
☆60Updated last week
Alternatives and similar repositories for ukb-rap-tools:
Users that are interested in ukb-rap-tools are comparing it to the libraries listed below
- Analyses conducting GWAS across the UKBB diverse superpopulations☆50Updated 7 months ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆31Updated last year
- Genotype-based Prediction (GenoPred)☆72Updated this week
- Cross-population polygenic prediction☆80Updated 5 months ago
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆24Updated 6 months ago
- Repo for the R package coloc☆164Updated last week
- Rapid standardisation and quality control of GWAS or QTL summary statistics☆80Updated 2 weeks ago
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆48Updated 4 years ago
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆66Updated 4 years ago
- ☆63Updated 10 months ago
- Development for SAIGE and SAIGE-GENE(+)☆75Updated this week
- CELLECT (CELL-type Expression-specific integration for Complex Traits)☆81Updated 8 months ago
- methods for functional summary-based imputation☆81Updated 2 years ago
- Easily download publicly available GWAS summary statistics.☆76Updated last year
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆19Updated 2 years ago
- Hypothesis Prioritisation in multi-trait Colocalization☆52Updated last year
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 3 years ago
- Partners Biobank genomics data QC☆26Updated 5 years ago
- Find causal cell-types underlying complex trait genetics☆84Updated 2 months ago
- Reading, querying and writing GWAS summary data in VCF format☆80Updated last year
- ☆78Updated 2 years ago
- Pleiotropy-informed conditional and conjunctional false discovery rate☆29Updated last year
- ☆56Updated 3 months ago
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆64Updated last month
- LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.☆113Updated 2 years ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆110Updated 4 months ago
- Source code of FUMA GWAS web application☆57Updated last year
- R package for CAUSE☆55Updated last year
- Visualization of Colocalization Between eQTL and GWAS Data☆83Updated 2 years ago
- Software for estimating correlation of trait effect sizes across populations☆46Updated 3 weeks ago