Alternatives and similar repositories for ukb-rap-tools

Users that are interested in ukb-rap-tools are comparing it to the libraries listed below

• chr1swallace / coloc
  Repo for the R package coloc
  ☆166Updated last month
• Al-Murphy / MungeSumstats
  Rapid standardisation and quality control of GWAS or QTL summary statistics
  ☆81Updated last month
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated 3 weeks ago
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆82Updated 6 months ago
• astheeggeggs / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆19Updated 2 years ago
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆114Updated last month
• josefin-werme / LAVA
  ☆68Updated 11 months ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆50Updated 4 years ago
• statgen / METAL
  Meta-analysis of genomewide association scans
  ☆55Updated 10 months ago
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆53Updated last year
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆72Updated 2 weeks ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆76Updated last week
• gamazonlab / MR-JTI
  ☆56Updated 4 months ago
• genomics-dev / ukb-pret
  ☆31Updated 4 months ago
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆84Updated 3 years ago
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆66Updated 4 years ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last year
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆116Updated 5 months ago
• Annefeng / PBK-QC-pipeline
  Partners Biobank genomics data QC
  ☆26Updated 5 years ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆76Updated last year
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆85Updated 3 years ago
• rondolab / MR-PRESSO
  Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.
  ☆90Updated last year
• rhhao / csMR
  Perform cell-stratified MR analysis through integrating GWAS and QTL data
  ☆26Updated 7 months ago
• boxiangliu / locuscomparer
  LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
  ☆115Updated 2 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆63Updated 7 months ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• MRCIEU / ieugwasr
  R interface to the IEU GWAS database API
  ☆95Updated last month
• MRCIEU / gwasvcf
  Reading, querying and writing GWAS summary data in VCF format
  ☆80Updated last year
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆46Updated this week