SBIMB / StellarPGx
Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.
☆33Updated 3 weeks ago
Alternatives and similar repositories for StellarPGx:
Users that are interested in StellarPGx are comparing it to the libraries listed below
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆62Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆68Updated 7 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆97Updated 2 years ago
- Data and information about the Polaris study☆53Updated 5 years ago
- CNV screening and annotation tool☆25Updated 8 years ago
- ☆39Updated last year
- Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes☆62Updated this week
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- PGxPOP☆16Updated 2 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year
- Burden testing against public controls☆50Updated last year
- Powerful statistics for VCF files☆69Updated last year
- A Python package for pharmacogenomics (PGx) research☆71Updated 2 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆80Updated 4 months ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆66Updated this week
- TIDDIT - structural variant calling☆73Updated 2 weeks ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- mtDNA Variant Caller☆34Updated 4 months ago
- Precision HLA typing from next-generation sequencing data☆66Updated last week
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆79Updated 2 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆85Updated 2 months ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- Phenotype driven gene prioritization for HPO☆45Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆46Updated this week
- ☆16Updated 3 years ago
- A tool to genotype CYP2D6 with WGS data☆51Updated last year
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- ⛏ HLA predictions from NGS shotgun data☆53Updated last week