Sydney Phylogenetics Workshop
☆69Jul 10, 2025Updated 10 months ago
Alternatives and similar repositories for SydneyPhyloWorkshop
Users that are interested in SydneyPhyloWorkshop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆20Jun 15, 2024Updated last year
- coevolve R package for Bayesian generalized dynamic phylogenetic models using Stan☆12Updated this week
- Bayesian estimation of the evolutionary rate matrix.☆10Dec 8, 2025Updated 5 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated 9 months ago
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference☆47Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Pathogen evolution, selection and immunity☆45Mar 5, 2024Updated 2 years ago
- contains R scripts exemplifying use of multivariate mixed models in a variety of R packages.☆15Nov 8, 2017Updated 8 years ago
- For all your cluster needs☆18Feb 3, 2023Updated 3 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆41Mar 31, 2026Updated last month
- Comprehensive resistance detection from WGS data☆19May 7, 2026Updated last week
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Updated this week
- An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data☆20Jan 30, 2024Updated 2 years ago
- genetic distance plotting for recombination events analysis☆10Feb 25, 2026Updated 2 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- Phylodynamic inference☆22May 15, 2020Updated 6 years ago
- ☆22Mar 19, 2025Updated last year
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆43May 5, 2026Updated 2 weeks ago
- A Python package to update the MLST database for the mlst tool.☆26May 4, 2026Updated 2 weeks ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆63Mar 15, 2026Updated 2 months ago
- Quality control for phylogenetic analyses☆13Apr 27, 2026Updated 3 weeks ago
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 3 years ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆67Apr 21, 2025Updated last year
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecula…☆11Feb 19, 2026Updated 3 months ago
- Influenza genome analysis Nextflow workflow☆32Sep 15, 2025Updated 8 months ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆39Apr 6, 2026Updated last month
- ☆13Sep 1, 2020Updated 5 years ago
- A linguistics-focussed command line tool for generating BEAST XML files.☆21Nov 8, 2021Updated 4 years ago
- phylogenetic networks using ggplot2 and ggtree☆11May 5, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Oct 3, 2025Updated 7 months ago
- Evaluating Nanopore-based bacterial variant calling☆22Jul 23, 2025Updated 9 months ago
- A MinION-based pipeline for tracking species biodiversity☆13Feb 19, 2024Updated 2 years ago
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated last year
- Best-fit model selection☆89Mar 21, 2024Updated 2 years ago
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆18Jun 26, 2022Updated 3 years ago