simon-ho / SydneyPhyloWorkshopLinks
Sydney Phylogenetics Workshop
☆62Updated this week
Alternatives and similar repositories for SydneyPhyloWorkshop
Users that are interested in SydneyPhyloWorkshop are comparing it to the libraries listed below
Sorting:
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- Using ggtree to build phylogenetic trees☆47Updated 7 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆88Updated last month
- Automatically exported from code.google.com/p/jmodeltest2☆80Updated 3 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆31Updated 11 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆42Updated last year
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆76Updated 3 months ago
- ☆55Updated last month
- Assembly of Phylogenomic Datasets from High-Throughput Sequencing data☆26Updated 3 weeks ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆60Updated 9 months ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆54Updated 2 weeks ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 4 months ago
- ☆12Updated 3 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated 2 years ago
- Various functions for analysis of microbial community data☆45Updated 2 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated last month
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 3 months ago
- ☆71Updated 3 weeks ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 7 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆74Updated 2 years ago
- Recovering genes from targeted sequence capture data☆124Updated 5 months ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆32Updated 2 years ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 9 months ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆81Updated 2 weeks ago
- ☆12Updated last year
- [deprecated] Please use ampvis2☆8Updated 7 years ago