Sydney Phylogenetics Workshop
☆75Jun 22, 2026Updated last month
Alternatives and similar repositories for SydneyPhyloWorkshop
Users that are interested in SydneyPhyloWorkshop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- coevolve R package for Bayesian generalized dynamic phylogenetic models using Stan☆14May 15, 2026Updated 2 months ago
- ☆20Jun 15, 2024Updated 2 years ago
- Bayesian estimation of the evolutionary rate matrix.☆10Dec 8, 2025Updated 7 months ago
- For all your cluster needs☆18Feb 3, 2023Updated 3 years ago
- Pathogen evolution, selection and immunity☆46Mar 5, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference☆49Updated this week
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆42Jul 2, 2026Updated 2 weeks ago
- Comprehensive resistance detection from WGS data☆20Jun 4, 2026Updated last month
- Taxonomic Classification of Bacteria and Archaea Genomes☆16May 20, 2026Updated 2 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated last month
- contains R scripts exemplifying use of multivariate mixed models in a variety of R packages.☆15Nov 8, 2017Updated 8 years ago
- An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data☆20Jan 30, 2024Updated 2 years ago
- genetic distance plotting for recombination events analysis☆10Jul 14, 2026Updated last week
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- ☆23Mar 19, 2025Updated last year
- Influenza genome analysis Nextflow workflow☆33Sep 15, 2025Updated 10 months ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆64Mar 15, 2026Updated 4 months ago
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 3 years ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated last month
- Quality control for phylogenetic analyses☆13Jul 13, 2026Updated last week
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆67Apr 21, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 3 years ago
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated last year
- coevol -- Correlated evolution of substitution rates and quantitative traits☆13Oct 18, 2024Updated last year
- ☆13Sep 1, 2020Updated 5 years ago
- A linguistics-focussed command line tool for generating BEAST XML files.☆21Nov 8, 2021Updated 4 years ago
- Here you can find the scripts we used in our tutorial "Falling in love with R". You can look for them in our Youtube or Facebook page: Wi…☆12May 13, 2022Updated 4 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecula…☆11Feb 19, 2026Updated 5 months ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆40Apr 6, 2026Updated 3 months ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Oct 3, 2025Updated 9 months ago
- phylogenetic networks using ggplot2 and ggtree☆12Jun 11, 2026Updated last month
- A MinION-based pipeline for tracking species biodiversity☆13Feb 19, 2024Updated 2 years ago
- Best-fit model selection☆89Mar 21, 2024Updated 2 years ago
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- Phylodynamic inference☆23May 15, 2020Updated 6 years ago