Pipeline of tools to process raw fastq data and produce meaningful genomic data
☆14Feb 20, 2020Updated 6 years ago
Alternatives and similar repositories for pipeline-perl
Users that are interested in pipeline-perl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Open-source reference stack for Sync for Science☆14Sep 4, 2019Updated 6 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Jul 28, 2025Updated 8 months ago
- R package for simulation of caffeine concentration <doi:10.12793/tcp.2017.25.3.141>. https://asancpt.github.io/caffsim☆10Aug 26, 2020Updated 5 years ago
- Run multiple Pipeline5 instances at once☆11Jun 6, 2025Updated 10 months ago
- ☆21Dec 23, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Collection of various biomedical data models in parseable formats.☆29Jan 5, 2026Updated 3 months ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- ☆10May 31, 2022Updated 3 years ago
- SCCNV: a software tool for identifying copy number variation from single-cell whole-genome sequencing☆13Jul 21, 2020Updated 5 years ago
- MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and cover…☆23Updated this week
- Toolkit for single-cell copy number analysis☆32Dec 15, 2025Updated 4 months ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- Various algorithms for analysing genomics data☆273Updated this week
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Apr 10, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 9 months ago
- The code for processing single cell RNA-Seq dataset from ESCC cohorts☆12May 13, 2021Updated 4 years ago
- Scripts used for the ACT paper☆12May 6, 2021Updated 4 years ago
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 5 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- code and dataset for spatialDWLS☆14Apr 18, 2021Updated 5 years ago
- ☆24Updated this week
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- Whole genome workflows☆13Nov 9, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The hottest login theme around for KDE Plasma 5☆14Nov 12, 2018Updated 7 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- Dockerised and simplified version of SeqWare-CGP-SomaticCore☆14Mar 5, 2021Updated 5 years ago
- Repository detailing updated allowlisting and clonal analysis workflow☆10Feb 1, 2025Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- Windmill: data portal for metadata submission and query☆31Updated this week
- Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.☆12Mar 22, 2017Updated 9 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- R Package for phasing of single cell Strand-seq data☆11Jan 14, 2025Updated last year
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 2 weeks ago
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Sep 19, 2022Updated 3 years ago
- Estimation of isoelectric point of peptides and proteins using support vector machines (SVM).☆10Sep 10, 2016Updated 9 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Mar 28, 2026Updated 3 weeks ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago