ataudt / methimputeLinks
Impute DNA methylation from WGBS data.
☆11Updated 6 years ago
Alternatives and similar repositories for methimpute
Users that are interested in methimpute are comparing it to the libraries listed below
Sorting:
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 8 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- DriverPower☆26Updated last year
- Flexible Bayesian inference of mutational signatures☆41Updated 3 years ago
- Make rapid visualizations of RNA-seq data in R☆20Updated 4 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated last year
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Updated 8 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- Filter and prioritize fusion calls☆20Updated 2 weeks ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 4 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Updated 2 years ago
- ☆14Updated 2 years ago
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆22Updated 5 years ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Updated 6 years ago
- Multi-sample somatic variant caller☆52Updated 4 years ago
- Fast fusion detection using kallisto☆79Updated 8 months ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Summary of a single or multiple MAF files.☆13Updated last year
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 8 years ago