dib-lab / 2018-ncbi-lineagesLinks
Extract lineage CSVs from NCBI for use with sourmash lca.
☆29Updated last year
Alternatives and similar repositories for 2018-ncbi-lineages
Users that are interested in 2018-ncbi-lineages are comparing it to the libraries listed below
Sorting:
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Toolkit for establishing, updating, and validating GTDB species clusters☆21Updated 2 months ago
- Metagenomic profiling and phylogenetic distances via common kmers☆43Updated 4 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Gene-flank analysis tool☆29Updated 8 months ago
- Strain Resolution ON Graphs☆48Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 4 years ago
- ☆42Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- MAG Circularization Method☆33Updated 3 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- Scalable creating/updating of metagenome profiling databases☆63Updated 2 months ago
- Protein Alignment and Detection Interface☆61Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Locus and lineage tests for bacterial GWAS☆29Updated 7 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆67Updated 5 years ago
- Visualize whole genome alignments as linear maps☆73Updated 3 weeks ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Recombination-free trees☆59Updated 5 months ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- A set of scripts for calculating pairwise SNP distance☆42Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 8 years ago