☆25Jan 9, 2026Updated 3 months ago
Alternatives and similar repositories for UKBioLM
Users that are interested in UKBioLM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆19Aug 13, 2025Updated 7 months ago
- For fine-tuning Enformer using paired WGS & gene expression data☆29Aug 27, 2025Updated 7 months ago
- ☆17Feb 15, 2026Updated last month
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆14Feb 24, 2026Updated last month
- ☆19Dec 20, 2025Updated 3 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- ☆11Nov 12, 2025Updated 4 months ago
- Code for "Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign"☆15Oct 4, 2024Updated last year
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- ☆93Nov 19, 2025Updated 4 months ago
- ☆14Aug 9, 2017Updated 8 years ago
- Snakemake workflow for comparing E-G links to experimental data☆23Mar 9, 2026Updated last month
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆129Oct 31, 2024Updated last year
- [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA☆22Apr 2, 2025Updated last year
- ☆50Sep 4, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆24Jun 26, 2024Updated last year
- ☆25Jun 5, 2025Updated 10 months ago
- federated learning with tabular learning☆28Mar 4, 2025Updated last year
- EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics☆33Jun 22, 2025Updated 9 months ago
- Scripts for building computational models of gene regulation with tensorflow☆27May 3, 2023Updated 2 years ago
- Computational Optimization of DNA Activity (CODA)☆67Apr 3, 2025Updated last year
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆320Mar 26, 2026Updated 2 weeks ago
- Genomic Pre-trained Network☆336Mar 25, 2026Updated 2 weeks ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆16May 30, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Diffusion Model for Single-Cell Multiome Data Generation and Analysis☆31Feb 5, 2026Updated 2 months ago
- A multi-thread tool for identifying DNA methylation motifs from Pacbio reads☆11Mar 7, 2018Updated 8 years ago
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated 9 months ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Dec 7, 2022Updated 3 years ago
- An online database of variants functionally demonstrated to affect (or not affect) splicing.☆11Mar 20, 2025Updated last year
- Foundation Models for Genomics & Transcriptomics☆847Feb 24, 2026Updated last month
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆97Nov 13, 2025Updated 4 months ago
- Prostate gland segmentation with deep Convolutional Neural Networks☆10May 29, 2017Updated 8 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆558Jul 7, 2025Updated 9 months ago
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆15Aug 8, 2024Updated last year
- Benchmarks for classification of genomic sequences☆173Aug 14, 2025Updated 7 months ago
- JanusDNA☆27Mar 19, 2026Updated 3 weeks ago
- Pyramidal Recurrent Units (PRUs): A New LSTM Unit☆10Aug 29, 2018Updated 7 years ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆53Aug 11, 2025Updated 7 months ago
- Linear Attention for Efficient Bidirectional Sequence Modeling☆16May 13, 2025Updated 10 months ago