HelloWorldLTY / UKBioLMLinks
☆22Updated 3 weeks ago
Alternatives and similar repositories for UKBioLM
Users that are interested in UKBioLM are comparing it to the libraries listed below
Sorting:
- ☆26Updated 2 years ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆100Updated 5 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆44Updated last week
- A VGAE-based model to infer transcription factor regulatory network☆28Updated 3 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆91Updated 3 months ago
- Computational Optimization of DNA Activity (CODA)☆67Updated 9 months ago
- For fine-tuning Enformer using paired WGS & gene expression data☆26Updated 5 months ago
- code to run sei and obtain sei and sequence class predictions☆111Updated 3 years ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆15Updated 2 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆66Updated last year
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆91Updated 2 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆82Updated last year
- ☆87Updated 2 months ago
- ☆69Updated 6 months ago
- ☆59Updated this week
- deep learning-inspired explainable sequence model for transcription initiation☆100Updated 10 months ago
- Single-cell biological network inference using a heterogeneous graph transformer☆76Updated 11 months ago
- ☆15Updated 3 months ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆89Updated 3 years ago
- PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).☆62Updated last month
- ☆18Updated last year
- Single-cell perturbation effects prediction benchmark☆53Updated 3 weeks ago
- ☆40Updated 3 years ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆59Updated last year
- ☆25Updated 5 months ago
- A foundation model for single-cell epigenomic data☆56Updated 3 weeks ago
- ☆45Updated 2 years ago
- ☆19Updated last year
- UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.☆49Updated last week
- ☆90Updated 2 years ago