Alternatives and similar repositories for UKBioLM

Users that are interested in UKBioLM are comparing it to the libraries listed below

• liu-bioinfo-lab / EPCOT
  ☆25Updated 2 years ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆67Updated 9 months ago
• shirondru / enformer_fine_tuning
  For fine-tuning Enformer using paired WGS & gene expression data
  ☆23Updated 4 months ago
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆98Updated 4 months ago
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer link prediction
  ☆44Updated 3 months ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆66Updated last year
• madilabcode / scNET
  ☆59Updated 2 weeks ago
• xiongxslab / Translatomer
  ☆24Updated 4 months ago
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆82Updated last year
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆61Updated last year
• bm2-lab / scPerturBench
  Single-cell perturbation effects prediction benchmark
  ☆45Updated this week
• jzhoulab / puffin_manuscript
  ☆18Updated last year
• Illumina / PromoterAI
  ☆84Updated last month
• wenduocheng / DNALongBench
  ☆15Updated 3 months ago
• ma-compbio / Higashi
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
  ☆92Updated 2 months ago
• labomics / midas
  PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).
  ☆61Updated last month
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆110Updated 3 years ago
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆100Updated 10 months ago
• TencentAILabHealthcare / scPROTEIN
  ☆56Updated last year
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆89Updated last month
• TencentAILabHealthcare / scTranslator
  ☆74Updated 4 months ago
• theislab / CFGen
  ☆25Updated 4 months ago
• siyuh / Squidiff
  ☆96Updated 2 months ago
• melobio / Concerto-reproducibility
  ☆40Updated 3 years ago
• sunyolo / DeepTFni
  A VGAE-based model to infer transcription factor regulatory network
  ☆28Updated 3 years ago
• ShenLab-Genomics / SpliceTransformer
  SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
  ☆32Updated last year
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆76Updated 10 months ago
• Genentech / polygraph
  Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …
  ☆38Updated 9 months ago
• lanagarmire / Asgard
  ☆45Updated last year
• biomed-AI / CellFM
  ☆90Updated 4 months ago