Alternatives and similar repositories for UKBioLM

Users that are interested in UKBioLM are comparing it to the libraries listed below

• liu-bioinfo-lab / EPCOT
  ☆26Updated 2 years ago
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer link prediction
  ☆44Updated 2 weeks ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆67Updated 10 months ago
• madilabcode / scNET
  ☆59Updated last week
• ma-compbio / Higashi
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
  ☆91Updated 3 months ago
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆100Updated 5 months ago
• xy-chen16 / EpiAgent
  A foundation model for single-cell epigenomic data
  ☆57Updated last month
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆76Updated 11 months ago
• sunyolo / DeepTFni
  A VGAE-based model to infer transcription factor regulatory network
  ☆28Updated 3 years ago
• HantaoShu / DeepSEM
  ☆90Updated 2 years ago
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆61Updated last year
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆92Updated 2 months ago
• labomics / midas
  PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).
  ☆62Updated 2 months ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆89Updated 3 years ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆66Updated last year
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆100Updated 11 months ago
• shirondru / enformer_fine_tuning
  For fine-tuning Enformer using paired WGS & gene expression data
  ☆26Updated 5 months ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆46Updated 2 years ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆146Updated last year
• TencentAILabHealthcare / scPROTEIN
  ☆56Updated last year
• jzhoulab / puffin_manuscript
  ☆18Updated last year
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆111Updated 3 years ago
• melobio / Concerto-reproducibility
  ☆40Updated 3 years ago
• theislab / CFGen
  ☆25Updated 5 months ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆59Updated last year
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆82Updated last year
• xCompass-AI / GeneCompass
  GeneCompass
  ☆109Updated 2 months ago
• bm2-lab / scPerturBench
  Single-cell perturbation effects prediction benchmark
  ☆58Updated last month
• TencentAILabHealthcare / scTranslator
  ☆85Updated 5 months ago
• XWangLabTHU / NeuronMotif
  NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks
  ☆15Updated 2 years ago