HelloWorldLTY / UKBioLMLinks
☆21Updated 6 months ago
Alternatives and similar repositories for UKBioLM
Users that are interested in UKBioLM are comparing it to the libraries listed below
Sorting:
- ☆24Updated last year
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆43Updated last month
- Computational Optimization of DNA Activity (CODA)☆64Updated 6 months ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆93Updated 2 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆90Updated last year
- ☆24Updated last month
- For fine-tuning Enformer using paired WGS & gene expression data☆23Updated 2 months ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆59Updated last year
- code to run sei and obtain sei and sequence class predictions☆109Updated 2 years ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆81Updated 2 weeks ago
- SIMBA: SIngle-cell eMBedding Along with features☆63Updated last year
- A VGAE-based model to infer transcription factor regulatory network☆28Updated 3 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆81Updated last year
- A foundation model for single-cell epigenomic data☆37Updated this week
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆44Updated 2 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆86Updated 3 years ago
- ☆18Updated last year
- ☆54Updated last month
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆30Updated 11 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆98Updated 7 months ago
- ☆68Updated 5 months ago
- ☆80Updated 4 months ago
- PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).☆59Updated 2 months ago
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆41Updated 3 years ago
- ☆30Updated 2 years ago
- GeneCompass☆94Updated 2 weeks ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆98Updated last month
- ☆54Updated 10 months ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆27Updated 2 years ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆57Updated last year