[NPJ AI] A foundation model for individual genome modelling
☆29May 9, 2026Updated 3 months ago
Alternatives and similar repositories for UKBioLM
Users that are interested in UKBioLM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- For fine-tuning Enformer using paired WGS & gene expression data☆32Aug 27, 2025Updated last year
- Analyses related to the Borzoi paper.☆32Dec 14, 2025Updated 8 months ago
- ☆29Dec 15, 2025Updated 8 months ago
- Build foundation model for RNA or DNA data☆62Jul 19, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆134Oct 31, 2024Updated last year
- ☆13Apr 23, 2025Updated last year
- [ICML 2025] Fast and Low-Cost Genomic Foundation Models via Outlier Removal.☆19Jun 19, 2025Updated last year
- EPInformer workflows for gene-expression prediction from DNA sequence, epigenomic signals, and chromatin contacts.☆61Jul 17, 2026Updated last month
- [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA☆23Apr 2, 2025Updated last year
- RNA-seq prediction with deep convolutional neural networks.☆261Aug 28, 2025Updated last year
- ☆20Dec 20, 2025Updated 8 months ago
- Snakemake workflow for comparing E-G links to experimental data☆25Updated this week
- ☆100Apr 3, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆52Sep 4, 2025Updated 11 months ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆17Jun 25, 2025Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆364Jun 12, 2026Updated 2 months ago
- ☆25Aug 18, 2026Updated last week
- JanusDNA☆32Mar 19, 2026Updated 5 months ago
- Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tu…☆20Mar 15, 2026Updated 5 months ago
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆15Jul 14, 2026Updated last month
- A Genomic Foundation Model☆179Apr 16, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆52Mar 22, 2026Updated 5 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated last year
- the MAVISp database for annotations and predictions of variant effects at the protein level☆13Aug 18, 2026Updated last week
- Code for "Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign"☆17Oct 4, 2024Updated last year
- Computational Optimization of DNA Activity (CODA)☆69Apr 3, 2025Updated last year
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆16Nov 21, 2023Updated 2 years ago
- Foundation Models for Genomics & Transcriptomics☆915Feb 24, 2026Updated 6 months ago
- ☆21Jun 11, 2026Updated 2 months ago
- ☆37Jul 27, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆14Aug 9, 2017Updated 9 years ago
- HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.☆49Aug 23, 2025Updated last year
- TACO: TFBS-Aware Cis-Regulatory Element Optimization☆23Aug 1, 2025Updated last year
- ☆25Aug 20, 2024Updated 2 years ago
- Benchmarks for classification of genomic sequences☆182Aug 14, 2025Updated last year
- ☆35Feb 21, 2024Updated 2 years ago
- GENA-LM is a transformer masked language model trained on human DNA sequence.☆231Updated this week