yoavram / UnderTheRugLinks
Repo for "Evolution on rugged adaptive landscapes"
☆12Updated 4 years ago
Alternatives and similar repositories for UnderTheRug
Users that are interested in UnderTheRug are comparing it to the libraries listed below
Sorting:
- Fast Inference of Networks from Directed Regulations☆22Updated 2 years ago
- topological data analysis of population-scale microbiomes☆31Updated 2 years ago
- Connect the dots in networks.☆20Updated 5 years ago
- ☆15Updated 9 years ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆37Updated 2 years ago
- JBEI Quantitative Metabolic Modeling library☆13Updated 5 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- Similarity search in heterogeneous knowledge graphs using meta paths.☆29Updated 2 years ago
- Simulate microbial community batch culture experiments.☆43Updated last year
- Learning Kinetic Models from Time Series Proteomics and Metabolomics Data☆30Updated 3 years ago
- DYNamics Agnostic Network MOdels☆18Updated 7 years ago
- ☆24Updated 7 months ago
- community detection in multiplex networks☆10Updated 9 years ago
- Pyro models of SARS-CoV-2 variants☆77Updated last year
- Interpretable genotype-phenotype landscape modeling☆36Updated 2 years ago
- A collaborative review of the emerging COVID-19 literature. Join the chat here:☆118Updated last year
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data☆52Updated 7 years ago
- Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape☆11Updated 3 years ago
- Code for the analyses in the human reference interactome paper.☆28Updated 3 years ago
- A platform to do RNA science☆27Updated 4 years ago
- An experimental deep learning & genotype network-based system for predicting new influenza protein sequences.☆36Updated 2 years ago
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆25Updated 7 years ago
- Converts p-values in q-values, see (Storey and Tibshirani, 2003)☆29Updated 8 years ago
- Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference☆14Updated 3 years ago
- Methods for inferring undirected networks from data☆46Updated 4 years ago
- Data files of promoter and non-promoter sequences used to build CNN models☆13Updated 9 years ago
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆41Updated 4 years ago
- web based visualisation of molecular interaction data☆12Updated 7 months ago
- ☆23Updated 3 weeks ago