Analyzing RNA-Seq with approximate likelihood
☆26Dec 13, 2020Updated 5 years ago
Alternatives and similar repositories for polee
Users that are interested in polee are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Dec 26, 2025Updated 5 months ago
- ☆56Aug 11, 2022Updated 3 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Julia package for the Napari multi-dimensional image viewer☆11Jun 21, 2022Updated 3 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Dec 14, 2021Updated 4 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- Genetic coordinates so simple, it feels like MAGIC!☆10Jan 29, 2026Updated 4 months ago
- PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …☆30Mar 20, 2026Updated 2 months ago
- A package designed for simulating biological dynamics and control.☆22Apr 27, 2026Updated last month
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Dec 1, 2025Updated 6 months ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆38Nov 12, 2025Updated 6 months ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- ☆15May 22, 2026Updated 2 weeks ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Jun 3, 2022Updated 4 years ago
- 🧬High-performance genetics- and genomics-related data visualization using Makie.jl☆91Sep 11, 2025Updated 9 months ago
- GBWT-based handle graph☆34May 27, 2026Updated 2 weeks ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- Nucleic and amino acid primitive types☆34Apr 25, 2025Updated last year
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Building the compacted de Bruijn graph efficiently from references or reads.☆93Feb 26, 2026Updated 3 months ago
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆41Mar 9, 2026Updated 3 months ago
- An experimental tool to find approximate max-cuts in a large graph☆10Apr 28, 2021Updated 5 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 4 years ago
- Mapping sequencing data to De Bruijn graphs, fast☆34Updated this week
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆112Mar 11, 2026Updated 3 months ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Dec 9, 2020Updated 5 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- ☆24Apr 2, 2021Updated 5 years ago
- ☆34Jul 8, 2025Updated 11 months ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year