Alternatives and similar repositories for simplesam:

Users that are interested in simplesam are comparing it to the libraries listed below

• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆59Updated last year
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆60Updated 2 weeks ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆46Updated last month
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• refgenie / refgenie
  Reference genome resource manager
  ☆75Updated last year
• guigolab / grape-nf
  An automated RNA-seq pipeline using Nextflow
  ☆37Updated 6 months ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆44Updated 2 weeks ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆95Updated last year
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆58Updated this week
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated last month
• s-andrews / BamQC
  Mapped QC analysis program
  ☆43Updated 6 years ago
• kundajelab / genomedisco
  Software for comparing contact maps from HiC, CaptureC and other 3D genome data.
  ☆26Updated 6 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆40Updated 3 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated 7 months ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 3 years ago
• mahmoudibrahim / JAMM
  JAMM Peak Finder for Sequencing Datasets
  ☆29Updated 5 years ago
• PacificBiosciences / pbcore
  A Python library for reading and writing PacBio® data files
  ☆39Updated last month
• YeoLab / outrigger
  Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
  ☆65Updated 4 years ago
• pmelsted / pizzly
  Fast fusion detection using kallisto
  ☆80Updated 5 months ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 4 years ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated 2 weeks ago
• shawnzhangyx / PePr
  a peak-calling and differential analysis tool for replicated ChIP-Seq data
  ☆37Updated 2 years ago
• brentp / cigar
  simple library for dealing with SAM cigar strings
  ☆40Updated 4 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 6 months ago
• Oshlack / Clinker
  Gene Fusion Visualiser
  ☆51Updated 2 years ago
• ding-lab / hotspot3d
  3D hotspot mutation proximity analysis tool
  ☆47Updated 2 years ago
• seppinho / mutserve
  mtDNA Variant Caller
  ☆34Updated 3 months ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆30Updated last year
• harvardinformatics / NGmerge
  Merging paired-end reads and removing adapters
  ☆30Updated 5 years ago
• biowdl / RNA-seq
  A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample
  ☆31Updated 2 years ago