Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
☆33Jun 3, 2022Updated 3 years ago
Alternatives and similar repositories for RATS
Users that are interested in RATS are comparing it to the libraries listed below
Sorting:
- Sashimi plots for RNA-seq data using detected transcripts☆31Mar 18, 2025Updated 11 months ago
- Deprecated, see https://labsyspharm.github.io/rnaseq/☆12Feb 28, 2019Updated 7 years ago
- ☆10Feb 25, 2024Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆22Sep 1, 2021Updated 4 years ago
- Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis☆12Mar 10, 2021Updated 4 years ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆13Mar 14, 2019Updated 6 years ago
- DTU analysis tool inspired by llamas☆12Sep 28, 2025Updated 5 months ago
- Analyzing RNA-Seq with approximate likelihood☆26Dec 13, 2020Updated 5 years ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆18Nov 14, 2025Updated 3 months ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- RNA-seq analysis scripts☆16Jan 8, 2026Updated last month
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆29May 19, 2017Updated 8 years ago
- fastest GTF/GFF-to-BED converter chilling around☆32Jan 20, 2026Updated last month
- A Python library to visualize and analyze long-read transcriptomes☆66Jan 19, 2026Updated last month
- Prepare Sailfish and Salmon output for downstream analysis☆42Jun 6, 2019Updated 6 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Jun 3, 2025Updated 8 months ago
- Quality of life improvements for Bioinformatics in Python.☆31Feb 17, 2026Updated last week
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 7 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Apr 16, 2016Updated 9 years ago
- Explore the cancer relevance of your gene list☆52Dec 17, 2025Updated 2 months ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Aug 9, 2019Updated 6 years ago
- ☆20Feb 1, 2026Updated last month
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 2 years ago
- R data package for annotating/converting Gene IDs☆169Jul 6, 2025Updated 7 months ago
- ☆24Nov 9, 2017Updated 8 years ago
- Repository☆10Oct 23, 2024Updated last year
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- ☆23Nov 9, 2025Updated 3 months ago
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆25Jun 26, 2025Updated 8 months ago
- ☆24Jul 29, 2025Updated 7 months ago
- Script and pipeline for BRAINcode project☆17May 24, 2021Updated 4 years ago
- ☆20Sep 28, 2019Updated 6 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 5 months ago
- Use gene expression to predict phenotype sample information☆19Feb 13, 2018Updated 8 years ago