bartongroup / RATSLinks
Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
☆34Updated 3 years ago
Alternatives and similar repositories for RATS
Users that are interested in RATS are comparing it to the libraries listed below
Sorting:
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated 3 months ago
- RNA-seq workflow: differential transcript usage☆22Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Flexible Bayesian inference of mutational signatures☆35Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Genomic Association Tester☆31Updated 2 years ago
- a set of NGS pipelines☆24Updated last week
- Evolutionary Transcriptomics with R☆44Updated last week
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- R package wrapping bedtools☆41Updated 3 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last month
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated last month
- Make rapid visualizations of RNA-seq data in R☆19Updated 6 years ago
- ☆21Updated 10 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 3 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆27Updated last month
- Merge fastq files split over lanes☆20Updated 7 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- ☆13Updated 7 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year
- An R interface to the MEME Suite☆50Updated last month
- ☆33Updated 3 years ago
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆11Updated 5 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year