bartongroup / RATS
Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
☆32Updated 2 years ago
Alternatives and similar repositories for RATS:
Users that are interested in RATS are comparing it to the libraries listed below
- RNA-seq workflow: differential transcript usage☆21Updated last year
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated this week
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated this week
- a set of NGS pipelines☆24Updated last week
- Genomic Association Tester☆30Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 5 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- An R for fast and flexible DNA methylation analysis☆31Updated 7 months ago
- Flexible Bayesian inference of mutational signatures☆34Updated 2 years ago
- Version II of Mandalorion☆32Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- 📊 An R package of RNA-seq workflow☆16Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆22Updated 3 months ago
- ☆21Updated 6 months ago
- R package wrapping bedtools☆38Updated this week
- Evolutionary Transcriptomics with R☆42Updated last week
- Splice junction analysis and filtering from BAM files☆40Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 8 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated last year
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆14Updated 4 years ago
- ☆28Updated 3 months ago
- ☆21Updated 3 months ago
- DriverPower☆26Updated 2 months ago