bartongroup / RATSLinks
Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
☆34Updated 3 years ago
Alternatives and similar repositories for RATS
Users that are interested in RATS are comparing it to the libraries listed below
Sorting:
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 6 months ago
- RNA-seq workflow: differential transcript usage☆22Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Mapped QC analysis program☆44Updated 7 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Differential expression and allelic analysis, nonparametric statistics☆29Updated 8 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- An R interface to the MEME Suite☆52Updated 3 months ago
- Transcript quantification import with automatic metadata detection☆67Updated this week
- ☆32Updated 9 months ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 6 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- interactive plots for differential expression analysis☆34Updated 3 months ago
- A tidy interface for coverage analysis☆30Updated 5 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- ☆33Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 3 months ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Genomic Association Tester☆32Updated 2 years ago
- R package wrapping bedtools☆43Updated 6 months ago
- Integrative analysis of structural variations.☆40Updated last year