Isoform-level functional RNA-Seq analysis 🧬
☆37Nov 12, 2025Updated 5 months ago
Alternatives and similar repositories for isoformic
Users that are interested in isoformic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆35Nov 8, 2023Updated 2 years ago
- ☆21Feb 1, 2026Updated 2 months ago
- Differential expression and allelic analysis, nonparametric statistics☆31Jan 3, 2025Updated last year
- long read RNA-seq quantification☆109Mar 16, 2026Updated last month
- ☆15Mar 27, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆17Feb 21, 2024Updated 2 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Aug 3, 2023Updated 2 years ago
- Analyzing RNA-Seq with approximate likelihood☆26Dec 13, 2020Updated 5 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Jun 3, 2025Updated 10 months ago
- Pan-transcriptomic phenotyping☆19Mar 8, 2026Updated last month
- Benchmarking long-read RNA-seq analysis tools☆27Feb 17, 2025Updated last year
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 11 months ago
- Comprehensive and scalable differential splicing analyses☆18Dec 19, 2025Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Research Software Design by Example☆13Sep 7, 2025Updated 7 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 2 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Dec 9, 2020Updated 5 years ago
- Run any CLI tool on a Reproducible Isolated Environment ⚙️⚡☆14Mar 30, 2026Updated 2 weeks ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Oct 12, 2025Updated 6 months ago
- ☆17Oct 3, 2022Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆32Updated this week
- ☆18May 31, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Scripts to import your FeatureCounts output into DEXSeq☆35Oct 27, 2018Updated 7 years ago
- ☆14Apr 2, 2025Updated last year
- RNA-binding protein motif analysis☆10Sep 29, 2025Updated 6 months ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆91Feb 26, 2026Updated last month
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Dec 10, 2024Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆128Apr 10, 2026Updated last week
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆41Mar 9, 2026Updated last month
- An R package to plot interactive three-way differential expression analysis☆38Jan 14, 2026Updated 3 months ago
- ☆11Aug 21, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆18Jan 13, 2025Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11May 9, 2024Updated last year
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- ☆67Apr 9, 2024Updated 2 years ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆16Mar 13, 2026Updated last month