luciorq / isoformicView external linksLinks
Isoform-level functional RNA-Seq analysis π§¬
β36Nov 12, 2025Updated 3 months ago
Alternatives and similar repositories for isoformic
Users that are interested in isoformic are comparing it to the libraries listed below
Sorting:
- Differential expression and allelic analysis, nonparametric statisticsβ30Jan 3, 2025Updated last year
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.β34Nov 8, 2023Updated 2 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.β24Aug 3, 2023Updated 2 years ago
- Analyzing RNA-Seq with approximate likelihoodβ26Dec 13, 2020Updated 5 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.β15Jan 16, 2024Updated 2 years ago
- β14Aug 5, 2025Updated 6 months ago
- Comprehensive and scalable differential splicing analysesβ18Dec 19, 2025Updated last month
- Sashimi plots for RNA-seq data using detected transcriptsβ31Mar 18, 2025Updated 10 months ago
- Pan-transcriptomic phenotypingβ18Nov 5, 2025Updated 3 months ago
- long read RNA-seq quantificationβ102Feb 4, 2026Updated last week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysisβ63Jun 3, 2025Updated 8 months ago
- Isoform co-usage networks from single-cell RNA-seq dataβ16Feb 21, 2024Updated last year
- Detecting Aberrant Splicing Events from RNA-sequencing dataβ16Dec 10, 2024Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classesβ31Jun 16, 2024Updated last year
- β18May 31, 2024Updated last year
- β20Feb 1, 2026Updated last week
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improvemeβ¦β38Jun 23, 2023Updated 2 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomesβ36Nov 7, 2025Updated 3 months ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sampleβ19Dec 9, 2020Updated 5 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.β92Jan 29, 2026Updated 2 weeks ago
- Two pass alignment for long readsβ22Mar 9, 2021Updated 4 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantificationβ10May 12, 2025Updated 9 months ago
- Improved multi-sample transcript abundance estimates using adaptive priorsβ20Oct 29, 2018Updated 7 years ago
- β23Jun 7, 2024Updated last year
- A tool for Read Multi-Mapper Resolutionβ24Feb 15, 2017Updated 8 years ago
- β11Aug 21, 2024Updated last year
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptomeβ10Jan 25, 2019Updated 7 years ago
- Genetic coordinates so simple, it feels like MAGIC!β10Jan 29, 2026Updated 2 weeks ago
- β11Oct 28, 2025Updated 3 months ago
- Homologizer: phasing gene copies into polyploid subgenomesβ11Feb 3, 2026Updated last week
- A pipeline creation tool using Snakemakeβ12Updated this week
- RNA-binding protein motif analysisβ10Sep 29, 2025Updated 4 months ago
- Run any CLI tool on a Reproducible Isolated Environment βοΈβ‘β14Nov 24, 2025Updated 2 months ago
- β67Apr 9, 2024Updated last year
- Research Software Design by Exampleβ13Sep 7, 2025Updated 5 months ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series dataβ12Dec 11, 2025Updated 2 months ago
- β14Apr 2, 2025Updated 10 months ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).β16Jan 20, 2026Updated 3 weeks ago
- semi-reference-based short read compressionβ11Mar 5, 2019Updated 6 years ago