A web API and database for biological sample metadata
☆20Jan 27, 2026Updated last month
Alternatives and similar repositories for pephub
Users that are interested in pephub are comparing it to the libraries listed below
Sorting:
- Project metadata manager for PEPs in Python☆40Jan 5, 2026Updated 2 months ago
- Genomic interval machine learning☆21Jan 14, 2026Updated last month
- A high-performance search engine for large-scale genomic interval datasets☆19Sep 1, 2021Updated 4 years ago
- Performance-critical tools to manipulate, analyze, and process genomic interval data☆24Mar 1, 2026Updated last week
- LLM retrieval augmented generation agent for the Monarch Knowledge graph.☆27Sep 17, 2025Updated 5 months ago
- Calculate and plot distributions of genomic ranges☆27Apr 23, 2025Updated 10 months ago
- Documentation and tutorials worth sharing.☆10Dec 7, 2022Updated 3 years ago
- 🍇 Embiggen is the Python Graph Representation learning, Prediction and Evaluation submodule of the GRAPE library.☆44Jan 8, 2026Updated 2 months ago
- ☆11May 25, 2024Updated last year
- This repository contains code for the AOP-Wiki XML-to-RDF conversion and guidance to deploy a Virtuoso SPARQL endpoint Docker image that …☆12Mar 1, 2026Updated last week
- An extension to Spotipy for anonymous access to the Spotify Web API☆12Nov 7, 2025Updated 4 months ago
- ☆10Feb 18, 2018Updated 8 years ago
- data embedding based on approximate nearest neighbour☆39Feb 28, 2026Updated last week
- ☆12Jul 15, 2024Updated last year
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆12Mar 21, 2025Updated 11 months ago
- ☆15Feb 5, 2025Updated last year
- Datastores for reads, not your papa's FASTQ files.☆11Jul 28, 2023Updated 2 years ago
- Public repository for the biodata resource inventory performed in 2022.☆11Nov 25, 2025Updated 3 months ago
- ☆13Apr 5, 2024Updated last year
- A collaborative guidebook for reusable data best practices☆13Mar 5, 2023Updated 3 years ago
- Validate and submit reads using Webin-CLI in batch.☆11Aug 3, 2023Updated 2 years ago
- A python library for calculating semantic similarity between patients in N3C☆14Oct 5, 2022Updated 3 years ago
- AlphaFlow Reinforcement Learning☆10Apr 13, 2023Updated 2 years ago
- Front-end code for Serratus project website☆12Jul 2, 2024Updated last year
- ☆10Mar 1, 2026Updated last week
- Bloom filters in Julia☆18Jul 11, 2019Updated 6 years ago
- Generic methods, types and modules for the BioJulia ecosystem.☆12Jul 11, 2024Updated last year
- Repository for 2020 American Society of Biomechanics Tutorial☆12Oct 17, 2021Updated 4 years ago
- A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Rea…☆13Jun 22, 2024Updated last year
- Client to access ExperimentHub resources☆11Oct 30, 2025Updated 4 months ago
- ☆16Dec 3, 2025Updated 3 months ago
- Semantic prefix map registry☆13Feb 20, 2026Updated 2 weeks ago
- Pytorch implementation of DeePromoter Active sequence detection for promoter(DNA subsequence regulates transcription initiation of the ge…☆13Jul 8, 2021Updated 4 years ago
- Documentation for PEP specification and all PEPkit software☆10Updated this week
- Images for Saturn Cloud☆12Dec 18, 2025Updated 2 months ago
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- Easily extend JSON to encode and decode arbitrary Python objects.☆10Jul 28, 2022Updated 3 years ago
- This is a Model Context Protocol (MCP) server built with TypeScript. It provides a versatile tool to fetch and parse any standard RSS/Ato…