pepkit / geofetchLinks
Builds a PEP from SRA or GEO accessions
☆54Updated 3 weeks ago
Alternatives and similar repositories for geofetch
Users that are interested in geofetch are comparing it to the libraries listed below
Sorting:
- A rust framework to make using alevin-fry even simpler☆60Updated 8 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- Genomic coordinates of problematic genomic regions as GRanges☆49Updated 3 weeks ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 6 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- Snakemake pipeline for running MAJIQ☆23Updated 2 years ago
- VDJ Clonotyping & Analysis Tools☆50Updated 9 months ago
- Explore and download data from the recount3 project☆37Updated 3 months ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- A single cell sequencing read simulator.☆33Updated last year
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- Explore the cancer relevance of your gene list☆52Updated 2 weeks ago
- Create QC and summary reports for Alevin output☆31Updated 2 weeks ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆80Updated 2 weeks ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- ☆40Updated 5 months ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- simplified cellranger for long-read data☆19Updated 4 months ago
- binned motif enrichment analysis and visualisation☆43Updated 2 months ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 8 months ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆26Updated last year
- Differential ATAC-seq toolkit☆27Updated 2 years ago
- Motif manipulation functions for R.☆30Updated 3 months ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆37Updated last month
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago