pepkit / geofetchLinks
Builds a PEP from SRA or GEO accessions
☆52Updated 3 weeks ago
Alternatives and similar repositories for geofetch
Users that are interested in geofetch are comparing it to the libraries listed below
Sorting:
- A rust framework to make using alevin-fry even simpler☆56Updated 3 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last week
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- simplified cellranger for long-read data☆19Updated 3 months ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- binned motif enrichment analysis and visualisation☆41Updated this week
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- VDJ Clonotyping & Analysis Tools☆50Updated 4 months ago
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- Explore and download data from the recount3 project☆35Updated 2 months ago
- Create QC and summary reports for Alevin output☆31Updated 2 weeks ago
- Calculate and plot distributions of genomic ranges☆26Updated 3 months ago
- Genomic coordinates of problematic genomic regions as GRanges☆41Updated 7 months ago
- ☆34Updated this week
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 4 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- ☆22Updated 5 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆18Updated 3 months ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- A single cell sequencing read simulator.☆33Updated 9 months ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 10 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆60Updated 7 months ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- IDR☆31Updated 2 years ago
- BAGEL software☆28Updated last year