Builds a PEP from SRA or GEO accessions
☆54Apr 12, 2026Updated last month
Alternatives and similar repositories for geofetch
Users that are interested in geofetch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Project metadata manager for PEPs in Python☆40Apr 1, 2026Updated last month
- Bedfile perturbation tool☆17Mar 6, 2026Updated 2 months ago
- Annotating epigenetic variation among samples with region sets in R☆11Jan 18, 2025Updated last year
- Proteomics label-free quantification (LFQ) analysis pipeline☆37Jan 13, 2025Updated last year
- Install latest version of Aspera Connect and show example how to use it for downloading sequening data.☆20Apr 28, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package for Methylation-based Inference of Regulatory Activity☆13Apr 9, 2020Updated 6 years ago
- A GitHub action to install Nextflow☆29Updated this week
- CLI tool to verify workflow reproducibility☆17Jan 29, 2024Updated 2 years ago
- A high-performance search engine for large-scale genomic interval datasets☆20Sep 1, 2021Updated 4 years ago
- Modular job submitter for arbitrary pipelines or commands.☆26Apr 11, 2026Updated last month
- Reference genome resource manager☆74Mar 6, 2026Updated 2 months ago
- R package to quickly obtain count vectors from indexed bam files☆15Jun 13, 2025Updated 11 months ago
- Genomic interval machine learning☆22Mar 11, 2026Updated 2 months ago
- Author academic documents in markdown☆13Apr 20, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- List of IARC bioinformatics pipelines and resources☆57Apr 23, 2026Updated 3 weeks ago
- Test data for MultiQC.☆24May 12, 2026Updated last week
- Read fcs files.☆11Nov 13, 2025Updated 6 months ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 11 months ago
- Efficient querying of biological databases☆44Oct 27, 2025Updated 6 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Apr 24, 2026Updated 3 weeks ago
- A modular, containerized pipeline for PRO-seq data processing☆11Mar 6, 2026Updated 2 months ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆64Jun 3, 2025Updated 11 months ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated last year
- Build contrasts for models defined with formulaic☆12Updated this week
- Search for a set of compatible indexes for your sequencing experiment☆11Sep 6, 2019Updated 6 years ago
- Fasten toolkit, for streaming operations on fastq files☆82Oct 24, 2025Updated 6 months ago
- Convert vcf in parquet☆32Jan 23, 2025Updated last year
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆31Aug 26, 2024Updated last year
- ☆28Apr 21, 2026Updated 3 weeks ago
- Manager for multi-container computing environments☆26Mar 6, 2026Updated 2 months ago
- reference free variant assembly☆34Jul 14, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Download FASTQ files from SRA or ENA repositories.☆385May 12, 2026Updated last week
- Serves a web interface and RESTful API for reference genome assets.☆12Apr 11, 2026Updated last month
- Semantic Similarity in Bio-Ontologies☆18Jan 30, 2026Updated 3 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆92Jan 19, 2025Updated last year
- Documentation for PEP specification and all PEPkit software☆10Mar 25, 2026Updated last month
- TIDDIT - structural variant calling☆10Dec 8, 2025Updated 5 months ago
- A tool for semi-automatic cell type classification☆476Updated this week