pepkit / geofetchLinks
Builds a PEP from SRA or GEO accessions
☆52Updated this week
Alternatives and similar repositories for geofetch
Users that are interested in geofetch are comparing it to the libraries listed below
Sorting:
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last month
- binned motif enrichment analysis and visualisation☆40Updated 2 weeks ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Create QC and summary reports for Alevin output☆32Updated 2 months ago
- Motif manipulation functions for R.☆29Updated 2 months ago
- simplified cellranger for long-read data☆19Updated 2 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Genomic coordinates of problematic genomic regions as GRanges☆40Updated 7 months ago
- VDJ Clonotyping & Analysis Tools☆50Updated 4 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- Visual exploratory analysis of gene expression data☆43Updated 2 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated 4 months ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆18Updated 3 months ago
- iread☆25Updated 3 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆54Updated last month
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated last year
- Calculate and plot distributions of genomic ranges☆26Updated 2 months ago
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆32Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated last month
- A single cell sequencing read simulator.☆33Updated 9 months ago
- ☆17Updated last year
- Explore and download data from the recount3 project☆36Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago