A prediction model for differential gene expression (DE) based on genome-wide regulatory interactions
☆25Mar 9, 2023Updated 3 years ago
Alternatives and similar repositories for DEcode
Users that are interested in DEcode are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Jul 9, 2025Updated 9 months ago
- ☆20Oct 26, 2023Updated 2 years ago
- GTEx analysis scripts☆20Mar 14, 2017Updated 9 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- Collection of useful methods for single cell analysis☆15Aug 22, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆14Sep 1, 2024Updated last year
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 9 months ago
- A web API and database for biological sample metadata☆22Apr 19, 2026Updated 2 weeks ago
- A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.☆21Apr 27, 2025Updated last year
- Configs and descriptions of circos plots created on FUMA web application☆15Dec 10, 2017Updated 8 years ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- Predicting gene expression levels from genomic sequences☆54Jun 24, 2020Updated 5 years ago
- ☆12Apr 28, 2016Updated 10 years ago
- Genomic interval machine learning☆22Mar 11, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆13Jun 24, 2016Updated 9 years ago
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆16Sep 25, 2024Updated last year
- ☆21Mar 2, 2026Updated 2 months ago
- Scripts for building computational models of gene regulation with tensorflow☆27May 3, 2023Updated 3 years ago
- Simulating paired-end short sequencing reads from circular and linear genomes☆15May 14, 2021Updated 4 years ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- Little code snippets that do (hopefully) useful things☆23Jul 24, 2023Updated 2 years ago
- An interpretable deep-learning architecture of capsule networks for identifying cellular-type gene expression programs from single-cell R…☆27Dec 3, 2020Updated 5 years ago
- ☆25Feb 18, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An analytics package for single cell data☆22May 18, 2022Updated 3 years ago
- Pangenome Analysis in Prokaryotes Lesson☆13Aug 20, 2024Updated last year
- Colour and fill scales for 'ggplot2' using colour spaces.☆15Feb 24, 2021Updated 5 years ago
- Single Cell Genomics for Enhancing Cell Composition Inference from Bulk Genomics Data☆21Jul 13, 2021Updated 4 years ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆48Jul 17, 2023Updated 2 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Jun 11, 2021Updated 4 years ago
- predicting expression effects of human genome variants ab initio from sequence☆135Jan 28, 2025Updated last year
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆16Apr 13, 2026Updated 2 weeks ago
- Python Implementation of MetaNeighbor scRNAseq Analysis Method☆10Nov 11, 2025Updated 5 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- ☆10Jul 22, 2020Updated 5 years ago
- ☆23Apr 3, 2025Updated last year
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Oct 27, 2020Updated 5 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- DeepCC: a novel deep learning-based framework for cancer molecular subtype classification☆21Dec 1, 2021Updated 4 years ago
- Information Constraints on Auto-Encoding Variational Bayes☆11May 24, 2018Updated 7 years ago