databio / awesome-atac-analysisLinks
Links to ATAC-seq analysis tools
☆73Updated 4 years ago
Alternatives and similar repositories for awesome-atac-analysis
Users that are interested in awesome-atac-analysis are comparing it to the libraries listed below
Sorting:
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 2 months ago
- Tutorial Website☆60Updated 4 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- Estimate locus specific human LINE-1 expression.☆39Updated last month
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 10 months ago
- Basic workflow for ATAC-seq analysis☆92Updated last year
- Analysis pipeline for ATAC-seq Data☆62Updated 4 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆72Updated last year
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 4 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated 9 months ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated 10 months ago
- SNV calling from single cell sequencing☆116Updated last year
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- ☆63Updated last year
- ☆120Updated 2 years ago
- Tutorial for AMSI BioInfoSummer 2018☆30Updated 7 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 10 months ago
- Analysis of Paired-Tag datasets☆43Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- ☆88Updated 4 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆75Updated this week
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆57Updated 3 weeks ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago