Alternatives and similar repositories for IMPA

Users that are interested in IMPA are comparing it to the libraries listed below

• myzhengSIMM / TranSiGen
  ☆33Updated 9 months ago
• CaicedoLab / 2023_Moshkov_NatComm
  Predicting assays Using Morphological Analysis
  ☆14Updated last year
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆89Updated 8 months ago
• carpenter-singh-lab / 2023_Arevalo_NatComm_BatchCorrection
  Evaluating batch correction methods for image-based cell profiling
  ☆14Updated 2 months ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆127Updated 8 months ago
• valence-labs / TxPert
  A repository for reproducing experiments from the TxPert paper
  ☆18Updated 5 months ago
• recursionpharma / EFAAR_benchmarking
  External repo for the EFAAR benchmarking paper
  ☆22Updated last month
• pth1993 / DeepCE
  A deep learning framework for high-throughput mechanism-driven phenotype screening
  ☆51Updated 4 years ago
• TencentAILabHealthcare / ER-BERT
  ☆13Updated last year
• Boom5426 / Awesome-Phenotypic-Drug-Discovery
  PDD: Awesome Phenotypic Drug Discovery
  ☆35Updated 2 weeks ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆49Updated 3 months ago
• Bunnybeibei / GexMolGen
  Cross-modal generation of molecules from gene expression inputs. (Briefings in Bioinformatics 2024)
  ☆11Updated 5 months ago
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆62Updated 10 months ago
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆31Updated last year
• ruiyi-zhang / scPretrain
  scPretrain: Multi-task self-supervised learning for cell type classification
  ☆23Updated 3 years ago
• jianglikun / DeepTTC
  DeepTTC: a transformer-based model for predicting cancer drug response
  ☆18Updated 2 years ago
• recursionpharma / maes_microscopy
  Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
  ☆64Updated 4 months ago
• rampasek / DrVAE
  Drug Response Variational Autoencoder
  ☆32Updated 6 years ago
• KangBoming / BulkFormer
  BulkFormer: A large-scale foundation model for human bulk transcriptomes
  ☆23Updated last week
• MaayanLab / L1000toRNAseq
  ☆20Updated 3 years ago
• jump-cellpainting / datasets
  Images and other data from the JUMP Cell Painting Consortium
  ☆177Updated this week
• broadinstitute / cellpainting-gallery
  Cell Painting Gallery
  ☆110Updated this week
• pengxingang / TEIM
  TEIM: TCR-Epitope Interaction Modeling
  ☆52Updated 2 years ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆91Updated last week
• ml-jku / cloome
  ☆36Updated last year
• bm2-lab / UniTCR
  ☆11Updated last year
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆57Updated 3 years ago
• gozsari / ProtFeat
  ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.
  ☆20Updated last year
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆41Updated last year
• liugangcode / InfoAlign
  The code for "Learning Molecular Representation in a Cell"
  ☆36Updated 7 months ago