broadinstitute / imaging-platform-pipelinesLinks
Cell Painting and other pipelines from the Imaging Platform
☆18Updated 4 months ago
Alternatives and similar repositories for imaging-platform-pipelines
Users that are interested in imaging-platform-pipelines are comparing it to the libraries listed below
Sorting:
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- Optimizing the Cell Painting assay for image-based profiling☆20Updated 5 months ago
- Python package for processing image-based profiling data☆117Updated this week
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆41Updated last week
- Predicting Cell Health with Morphological Profiles☆37Updated 3 years ago
- ☆62Updated 3 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 4 months ago
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆10Updated this week
- CellProfiler tutorial pipelines and images☆93Updated 3 weeks ago
- Evaluating batch correction methods for image-based cell profiling☆14Updated 5 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated last year
- Spatial Single-Cell Analysis Toolkit☆91Updated 2 weeks ago
- Cell Painting Gallery☆90Updated 2 weeks ago
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆21Updated 5 months ago
- Your Personal Assistant in Computational Bioimaging.☆41Updated 2 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆76Updated 8 months ago
- Example CellProfiler pipelines.☆15Updated 2 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆46Updated this week
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆56Updated last year
- Interactive visualization of spatial omics data☆58Updated this week
- Methods for Image-Based Cell Profiling☆51Updated last year
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆27Updated last week
- Framework for image and flow cytometry analysis☆26Updated 3 weeks ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆28Updated last month
- Accessible and interoperable whole slide image analysis☆48Updated last week
- ☆33Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆79Updated 2 months ago
- A pipeline to transform images into valuable analysis items☆13Updated this week