Cell Painting and other pipelines from the Imaging Platform
☆24Jan 28, 2025Updated last year
Alternatives and similar repositories for imaging-platform-pipelines
Users that are interested in imaging-platform-pipelines are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Morphological profiling using deep learning☆125Oct 19, 2024Updated last year
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆19Feb 17, 2026Updated 2 months ago
- CellProfiler tutorial pipelines and images☆103Apr 11, 2026Updated 2 weeks ago
- A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.☆39Updated this week
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Dec 3, 2021Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆19Apr 20, 2026Updated last week
- Code and examples for optical pooled screens (updated protocol).☆14Jan 28, 2024Updated 2 years ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆45Apr 15, 2026Updated 2 weeks ago
- ☆13Jan 20, 2026Updated 3 months ago
- HiSV: a computational pipeline for structural variation detection from Hi-C data☆18Jun 20, 2025Updated 10 months ago
- A scalable machine learning pipeline for probe specificity prediction.☆14Mar 26, 2026Updated last month
- Methods for Image-Based Cell Profiling☆52May 8, 2024Updated last year
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- Trained models for use with QuPath☆16Aug 7, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A collection of IPython Notebooks on chemoinformatics☆13Mar 29, 2016Updated 10 years ago
- Community-contributed and experimental CellProfiler modules.☆75Jan 17, 2026Updated 3 months ago
- Target prediction☆14May 8, 2020Updated 5 years ago
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- 📈 Uptime monitor and status page for Suliman Sharif, powered by @upptime☆19Updated this week
- ☆28Aug 29, 2024Updated last year
- A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.☆179Mar 14, 2026Updated last month
- ☆23Mar 26, 2021Updated 5 years ago
- Microsopic Image Analyzer (MIA)☆28Aug 19, 2025Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A low-impact profiler to figure out how much memory each task in Dask is using☆24Apr 10, 2023Updated 3 years ago
- ☆21Jul 17, 2024Updated last year
- This is the code of our work CISS Certified Robustness Against Natural Language Attacks by Causal Intervention published on ICML 2022☆11Dec 6, 2022Updated 3 years ago
- Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"☆15Oct 17, 2024Updated last year
- r package for formatting tables☆88Updated this week
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆248Apr 2, 2026Updated 3 weeks ago
- Predicting Cell Health with Morphological Profiles☆40Jan 26, 2022Updated 4 years ago
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated 2 years ago
- Vascular Tree Synthesis Software. You will need CMake and ITK to run VascuSynth. Read the paper in the Insight Journal for instructions…☆12Jan 24, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code base for "Evaluation of Machine Learning-Assisted Directed Evolution Across Diverse Combinatorial Landscapes"☆15Jun 19, 2025Updated 10 months ago
- Python package for processing image-based profiling data☆137Updated this week
- PLAID (Plate Layouts using Artificial Intelligence Design) is a flexible constraint-programming model representing the Plate Layout Desig…☆17Nov 27, 2025Updated 5 months ago
- Code of paper: xJailbreak: Representation Space Guided Reinforcement Learning for Interpretable LLM Jailbreaking"☆18Apr 3, 2026Updated 3 weeks ago
- ☆24Apr 7, 2026Updated 3 weeks ago
- An Object-Oriented approach to Shiny modules☆145Sep 5, 2024Updated last year
- ☆15Jul 9, 2025Updated 9 months ago