Alternatives and similar repositories for cellpainting-gallery

Users that are interested in cellpainting-gallery are comparing it to the libraries listed below

• jump-cellpainting / 2024_Chandrasekaran_NatureMethods_CPJUMP1
  ☆66Updated 9 months ago
• jump-cellpainting / datasets
  Images and other data from the JUMP Cell Painting Consortium
  ☆180Updated this week
• jump-cellpainting / JUMP-Target
  Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays
  ☆23Updated 11 months ago
• carpenter-singh-lab / 2023_Arevalo_NatComm_BatchCorrection
  Evaluating batch correction methods for image-based cell profiling
  ☆14Updated 3 months ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆129Updated this week
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆51Updated 3 months ago
• recursionpharma / maes_microscopy
  Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
  ☆67Updated 6 months ago
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆124Updated last year
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆79Updated 4 months ago
• recursionpharma / EFAAR_benchmarking
  External repo for the EFAAR benchmarking paper
  ☆25Updated this week
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆131Updated 2 weeks ago
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆95Updated 9 months ago
• carpenter-singh-lab / 2023_Cimini_NatureProtocols
  Optimizing the Cell Painting assay for image-based profiling
  ☆21Updated 3 months ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆131Updated 10 months ago
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆231Updated 9 months ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆99Updated last year
• jkobject / geneformer
  ☆85Updated 3 months ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆102Updated last week
• broadinstitute / imaging-platform-pipelines
  Cell Painting and other pipelines from the Imaging Platform
  ☆22Updated 10 months ago
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆69Updated 11 months ago
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆62Updated last year
• bunnelab / virtues
  A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…
  ☆44Updated 9 months ago
• idekerlab / DrugCell
  A visible neural network model for drug response prediction
  ☆149Updated 2 years ago
• uhlerlab / cross-modal-autoencoders
  ☆56Updated 3 years ago
• JacobHanimann / scDINO
  Self-Supervised Vision Transformers for multiplexed imaging datasets
  ☆59Updated last year
• theislab / prophet
  ☆38Updated last month
• marakeby / pnet_prostate_paper
  P-NET, Biologically informed deep neural network for prostate cancer classification and discovery
  ☆163Updated 4 years ago
• microsoft / zero-shot-scfoundation
  ☆76Updated last year
• BoevaLab / CancerFoundation
  CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer
  ☆29Updated 2 months ago
• HakimBenkirane / CustOmics
  A deep-learning framework for multi-omics integration
  ☆31Updated 2 years ago