Alternatives and similar repositories for cellpainting-gallery

Users that are interested in cellpainting-gallery are comparing it to the libraries listed below

• jump-cellpainting / datasets
  Images and other data from the JUMP Cell Painting Consortium
  ☆177Updated this week
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods_CPJUMP1
  ☆66Updated 8 months ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆124Updated 2 weeks ago
• carpenter-singh-lab / 2023_Arevalo_NatComm_BatchCorrection
  Evaluating batch correction methods for image-based cell profiling
  ☆14Updated 2 months ago
• jump-cellpainting / JUMP-Target
  Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays
  ☆23Updated 9 months ago
• recursionpharma / maes_microscopy
  Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
  ☆64Updated 4 months ago
• recursionpharma / EFAAR_benchmarking
  External repo for the EFAAR benchmarking paper
  ☆22Updated last month
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆51Updated 2 months ago
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆78Updated 2 months ago
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆119Updated last year
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆89Updated 8 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆96Updated 7 months ago
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆222Updated 8 months ago
• jkobject / geneformer
  ☆81Updated 2 months ago
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆62Updated 10 months ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆127Updated 8 months ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆91Updated last week
• broadinstitute / imaging-platform-pipelines
  Cell Painting and other pipelines from the Imaging Platform
  ☆21Updated 9 months ago
• bunnelab / virtues
  A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical…
  ☆39Updated 8 months ago
• carpenter-singh-lab / 2023_Cimini_NatureProtocols
  Optimizing the Cell Painting assay for image-based profiling
  ☆21Updated 2 months ago
• AltschulerWu-Lab / MUSE
  MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…
  ☆35Updated 3 years ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆98Updated last year
• czi-ai / transcriptformer
  ☆87Updated 2 months ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆77Updated 8 months ago
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆107Updated last year
• ratschlab / HistoPlexer
  ☆23Updated 6 months ago
• Genentech / SpatialAgent
  ☆129Updated 6 months ago
• theislab / prophet
  ☆35Updated last month
• uhlerlab / cross-modal-autoencoders
  ☆55Updated 3 years ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆49Updated 3 months ago