CellProfiler tutorial pipelines and images
☆104May 19, 2026Updated 2 months ago
Alternatives and similar repositories for tutorials
Users that are interested in tutorials are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Example CellProfiler pipelines.☆20Jul 19, 2022Updated 4 years ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆45Jul 13, 2026Updated last week
- Community-contributed and experimental CellProfiler modules.☆75Updated this week
- Cell Painting and other pipelines from the Imaging Platform☆24Jan 28, 2025Updated last year
- Morphological profiling using deep learning☆129Jul 2, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Dec 3, 2021Updated 4 years ago
- ☆13Aug 16, 2024Updated last year
- ☆15Jul 29, 2022Updated 3 years ago
- HDF5 plugin for ImageJ and Fiji.☆12Nov 5, 2024Updated last year
- 🔬 Code-free deep segmentation for computational pathology☆58Jun 14, 2024Updated 2 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆47Dec 4, 2025Updated 7 months ago
- Simple Maven project for an ImageJ2 command☆34Apr 11, 2022Updated 4 years ago
- ☆15Dec 21, 2022Updated 3 years ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆27Dec 5, 2022Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Image stitching☆13Dec 23, 2018Updated 7 years ago
- Image classification for imaging flow cytometry.☆29Jan 3, 2025Updated last year
- ☆12Jun 11, 2023Updated 3 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆137Apr 9, 2020Updated 6 years ago
- ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy☆648Mar 29, 2026Updated 3 months ago
- a generalist algorithm for cellular segmentation with human-in-the-loop capabilities☆2,285Jun 14, 2026Updated last month
- A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.☆41Apr 24, 2026Updated 2 months ago
- Template for creating a new python repository☆13Sep 28, 2025Updated 9 months ago
- SegmenTation Analysis by ParaLlelization of 3D Datasets☆12Feb 22, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Creating figures and animations for multi-channel images with a focus on microscopy.☆82Dec 16, 2024Updated last year
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Jun 16, 2026Updated last month
- Codebase for Lung PET/CT Survival Analysis☆14Mar 16, 2022Updated 4 years ago
- Microsnoop: A generalist tool for microscopy image representation☆13Feb 27, 2025Updated last year
- QuPath extension to run StarDist nucleus detection☆48Jun 25, 2026Updated 3 weeks ago
- Optimizing the Cell Painting assay for image-based profiling☆21Aug 11, 2025Updated 11 months ago
- CytoData 2016 – origin story☆18Sep 15, 2017Updated 8 years ago
- ☆18Dec 4, 2025Updated 7 months ago
- Methods for Image-Based Cell Profiling☆52May 8, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Simple Maven project for an ImageJ 1.x plugin☆35Apr 11, 2022Updated 4 years ago
- Jupyter notebooks for CellProfiler and friends☆14Mar 23, 2018Updated 8 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 7 months ago
- Optimize image processing workflows in napari☆17May 1, 2025Updated last year
- Jupyter Notebooks for the Image Data Resource☆19Jun 25, 2026Updated 3 weeks ago
- Pan-cancer quantitative histopathology analysis using deep learning☆12Mar 1, 2022Updated 4 years ago
- Evaluating batch correction methods for image-based cell profiling☆15Aug 11, 2025Updated 11 months ago