CellProfiler / tutorialsLinks
CellProfiler tutorial pipelines and images
☆93Updated 3 weeks ago
Alternatives and similar repositories for tutorials
Users that are interested in tutorials are comparing it to the libraries listed below
Sorting:
- Cloud-based data annotation tools for biological images☆80Updated last year
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆69Updated 3 weeks ago
- Multiple-choice microscopy pipeline☆131Updated 2 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆77Updated last month
- Community-contributed and experimental CellProfiler modules.☆65Updated last week
- An introduction to deepcell and deep learning☆148Updated 7 months ago
- ☆81Updated 2 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆28Updated 3 weeks ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆173Updated this week
- Integrated pipeline for multiplexed image analysis☆90Updated 2 months ago
- ☆62Updated 3 months ago
- ☆11Updated 4 years ago
- Python package for processing image-based profiling data☆115Updated last week
- Toolbox for the analysis of smFISH images.☆62Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated 2 weeks ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆41Updated last week
- StarDist plugin for ImageJ☆30Updated 3 years ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆69Updated 2 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆76Updated 8 months ago
- ☆166Updated last month
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Interactive visualization of spatial omics data☆58Updated last week
- An introduction to bioimage analysis - http://bioimagebook.github.io☆68Updated 10 months ago
- Spatial Single-Cell Analysis Toolkit☆91Updated 2 weeks ago
- ☆32Updated last year
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- QuPath extension to run StarDist nucleus detection☆39Updated last month
- Bio-Formats image file format to raw format converter☆91Updated this week