Alternatives and similar repositories for tutorials

Users that are interested in tutorials are comparing it to the libraries listed below

• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆98Updated 2 years ago
• carpenterlab / 2016_Bray_NatureProtocols
  Supporting data files, documentation, and updated tips for the Cell Painting protocol
  ☆22Updated 4 years ago
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆144Updated last month
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆79Updated 4 months ago
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆82Updated last year
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆130Updated last week
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆155Updated last year
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆72Updated last week
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆100Updated last week
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆188Updated this week
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆66Updated 3 weeks ago
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆70Updated 2 years ago
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆160Updated 4 months ago
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆84Updated 3 weeks ago
• huangch / qust
  QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis
  ☆32Updated 6 months ago
• bioimage-io / bioimageio-chatbot
  Your Personal Assistant in Computational Bioimaging.
  ☆45Updated 8 months ago
• bioimagebook / bioimagebook.github.io
  An introduction to bioimage analysis - http://bioimagebook.github.io
  ☆76Updated 4 months ago
• DrHanLim / EzColocalization
  ☆12Updated 5 years ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆39Updated 3 months ago
• KerenLab / CellSighter
  ☆36Updated 2 years ago
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods_CPJUMP1
  ☆67Updated 10 months ago
• mehta-lab / VisCy
  computer vision models for single-cell phenotyping
  ☆80Updated last week
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆39Updated 3 years ago
• AllenCell / aics-ml-segmentation
  ☆32Updated 4 months ago
• peng-lab / BaSiCPy
  ☆91Updated last month
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆85Updated 3 weeks ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆73Updated last week
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆124Updated last year
• qupath / qupath-extension-stardist
  QuPath extension to run StarDist nucleus detection
  ☆48Updated 5 months ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated last year