CellProfiler / tutorials
CellProfiler tutorial pipelines and images
☆93Updated this week
Alternatives and similar repositories for tutorials:
Users that are interested in tutorials are comparing it to the libraries listed below
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆67Updated 6 months ago
- An introduction to deepcell and deep learning☆144Updated 5 months ago
- Cloud-based data annotation tools for biological images☆78Updated last year
- Community-contributed and experimental CellProfiler modules.☆63Updated last month
- An introduction to bioimage analysis - http://bioimagebook.github.io☆66Updated 7 months ago
- Toolbox for the analysis of smFISH images.☆59Updated last year
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆149Updated last week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆75Updated 2 weeks ago
- StarDist plugin for ImageJ☆28Updated 2 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆51Updated last month
- Multiple-choice microscopy pipeline☆124Updated 2 weeks ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆75Updated 6 months ago
- ☆68Updated this week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆133Updated last month
- ☆60Updated last month
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆41Updated last month
- Python package for processing image-based profiling data☆101Updated last week
- ☆10Updated 4 years ago
- Integrated pipeline for multiplexed image analysis☆84Updated this week
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆204Updated last year
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 5 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆97Updated 2 years ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆211Updated 2 months ago
- Learn morphological states of dynamic cells☆12Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆35Updated last year
- Optimizing the Cell Painting assay for image-based profiling☆19Updated 2 months ago
- ☆25Updated 2 months ago
- Cell Painting and other pipelines from the Imaging Platform☆17Updated last month
- Notebooks to illustrate how BigFISH is working.☆13Updated 2 years ago