CellProfiler / tutorialsLinks
CellProfiler tutorial pipelines and images
☆94Updated 2 months ago
Alternatives and similar repositories for tutorials
Users that are interested in tutorials are comparing it to the libraries listed below
Sorting:
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- Multiple-choice microscopy pipeline☆135Updated last week
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 3 years ago
- Cloud-based data annotation tools for biological images☆81Updated last year
- An introduction to deepcell and deep learning☆153Updated 11 months ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆79Updated last week
- ☆12Updated 4 years ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated 2 months ago
- Community-contributed and experimental CellProfiler modules.☆68Updated this week
- Integrated pipeline for multiplexed image analysis☆96Updated 6 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆180Updated this week
- ☆85Updated 6 months ago
- Toolbox for the analysis of smFISH images.☆68Updated last year
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆150Updated last month
- Your Personal Assistant in Computational Bioimaging.☆44Updated 6 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆63Updated 4 months ago
- Python package for processing image-based profiling data☆124Updated last week
- The official QuPath extension for InstanSeg☆26Updated this week
- A pixel classification based multiplexed image segmentation pipeline☆101Updated last year
- ☆28Updated 5 months ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆72Updated last month
- QuPath extension to run StarDist nucleus detection☆46Updated 3 months ago
- ☆34Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 weeks ago
- Interactive visualization of spatial omics data☆67Updated last week
- Spatial Single-Cell Analysis Toolkit☆99Updated 3 months ago
- multimodal whole slide image registration in a graph structure☆94Updated last year
- Raw format to OME-TIFF converter☆56Updated 3 weeks ago
- ☆186Updated this week