CellProfiler / tutorialsLinks
CellProfiler tutorial pipelines and images
☆98Updated 2 months ago
Alternatives and similar repositories for tutorials
Users that are interested in tutorials are comparing it to the libraries listed below
Sorting:
- Multiple-choice microscopy pipeline☆144Updated last month
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Updated 2 years ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 4 years ago
- An introduction to deepcell and deep learning☆155Updated last year
- Cloud-based data annotation tools for biological images☆84Updated last year
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆189Updated this week
- Self-supervised models for encoding protein localization patterns from microscopy images☆79Updated 5 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated last month
- Integrated pipeline for multiplexed image analysis☆101Updated last week
- Python package for processing image-based profiling data☆130Updated last week
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆85Updated last month
- ☆12Updated 5 years ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆161Updated 5 months ago
- ☆91Updated 2 months ago
- Your Personal Assistant in Computational Bioimaging.☆45Updated 9 months ago
- Community-contributed and experimental CellProfiler modules.☆72Updated 3 weeks ago
- Toolbox for the analysis of smFISH images.☆71Updated 2 years ago
- multimodal whole slide image registration in a graph structure☆99Updated last year
- ☆69Updated 11 months ago
- QuPath extension to run StarDist nucleus detection☆48Updated 6 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆85Updated this week
- Interactive visualization of spatial omics data☆73Updated last week
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆232Updated 2 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- StarDist plugin for ImageJ☆30Updated 3 years ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆34Updated 6 months ago
- ☆30Updated 2 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆152Updated 3 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 3 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 months ago