CellProfiler / tutorials
CellProfiler tutorial pipelines and images
☆84Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for tutorials
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆19Updated 2 years ago
- Cloud-based data annotation tools for biological images☆76Updated 9 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆133Updated this week
- Toolbox for the analysis of smFISH images.☆57Updated last year
- Multiple-choice microscopy pipeline☆112Updated last month
- Self-supervised models for encoding protein localization patterns from microscopy images☆74Updated 2 months ago
- ☆66Updated last week
- ☆55Updated last week
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆65Updated 2 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆35Updated last year
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆70Updated this week
- Integrated pipeline for multiplexed image analysis☆76Updated 2 weeks ago
- StarDist plugin for ImageJ☆27Updated 2 years ago
- Learn morphological states of dynamic cells☆12Updated last year
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated last month
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆127Updated 2 months ago
- Your Personal Assistant in Computational Bioimaging.☆35Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆25Updated 3 weeks ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆60Updated 3 months ago
- ☆29Updated 11 months ago
- Community-contributed and experimental CellProfiler modules.☆58Updated last week
- Spatial Single-Cell Analysis Toolkit☆74Updated this week
- ☆116Updated this week
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆39Updated last week
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆61Updated last year
- An introduction to deepcell and deep learning☆141Updated last month
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆132Updated 4 years ago
- ☆10Updated 3 years ago
- A platform for compiling, analyzing, and exploring tracking data☆42Updated 3 weeks ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆45Updated 3 weeks ago