CellProfiler / CellProfiler-plugins
Community-contributed and experimental CellProfiler modules.
☆63Updated 2 weeks ago
Alternatives and similar repositories for CellProfiler-plugins:
Users that are interested in CellProfiler-plugins are comparing it to the libraries listed below
- Methods for Image-Based Cell Profiling☆50Updated 9 months ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆40Updated 2 weeks ago
- CellProfiler tutorial pipelines and images☆89Updated 3 months ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year
- Predicting Cell Health with Morphological Profiles☆36Updated 3 years ago
- ☆10Updated 4 years ago
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆150Updated 6 months ago
- CytoData 2016 – origin story☆18Updated 7 years ago
- Example CellProfiler pipelines.☆13Updated 2 years ago
- Toolbox for the analysis of smFISH images.☆59Updated last year
- Self-supervised models for encoding protein localization patterns from microscopy images☆75Updated 5 months ago
- Python package for processing image-based profiling data☆87Updated 2 weeks ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆97Updated 2 years ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆65Updated 6 months ago
- Microscopy Image Cytometry Toolkit☆116Updated 2 years ago
- Multiple-choice microscopy pipeline☆120Updated 2 weeks ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated 2 weeks ago
- Bio-Formats image file format to raw format converter☆85Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 8 months ago
- Histology Topography Cytometry Analysis Toolbox☆66Updated last year
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Spatial Single-Cell Analysis Toolkit☆85Updated 3 weeks ago
- Cell Painting and other pipelines from the Imaging Platform☆16Updated 3 weeks ago
- Cloud-based data annotation tools for biological images☆77Updated last year
- ☆32Updated this week
- Repository for PlateEditor, the web application allowing management of plate layout, results visualization and analysis☆20Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated 4 months ago
- Morphological profiling using deep learning☆112Updated 4 months ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month