Community-contributed and experimental CellProfiler modules.
☆77Aug 21, 2026Updated 3 weeks ago
Alternatives and similar repositories for CellProfiler-plugins
Users that are interested in CellProfiler-plugins are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Example CellProfiler pipelines.☆21Jul 19, 2022Updated 4 years ago
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆171Jul 21, 2025Updated last year
- CellProfiler tutorial pipelines and images☆104Updated this week
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆45Sep 11, 2026Updated last week
- An open-source application for biological image analysis☆1,137Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Morphological profiling using deep learning☆129Sep 2, 2026Updated 2 weeks ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Sep 14, 2020Updated 6 years ago
- A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.☆43Updated this week
- AICS ML Segmentation (One-Way) Mirror☆28May 2, 2021Updated 5 years ago
- ImageJ plugin suite for image feature extraction☆11Dec 17, 2015Updated 10 years ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 5 years ago
- Methods for Image-Based Cell Profiling☆52May 8, 2024Updated 2 years ago
- ☆13Aug 7, 2020Updated 6 years ago
- Image stitching☆13Dec 23, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆21Aug 20, 2026Updated 3 weeks ago
- Cell Painting and other pipelines from the Imaging Platform☆24Jan 28, 2025Updated last year
- ☆45Updated this week
- Image classification for imaging flow cytometry.☆29Jan 3, 2025Updated last year
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 9 months ago
- ☆92Dec 17, 2023Updated 2 years ago
- Common Java library for digital image processing books by Burger & Burge (OBSOLETE!)☆13Aug 3, 2022Updated 4 years ago
- Lectures for a napari training course☆52Aug 30, 2023Updated 3 years ago
- Example usage of the Benchling API: https://docs.benchling.com/☆38Jun 10, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- TensorFlow-based classifier for microscope image focus quality.☆18Jun 14, 2022Updated 4 years ago
- fragbuilder is a tool to create, setup and analyze QM calculations on peptides.