CellProfiler / CellProfiler-pluginsLinks
Community-contributed and experimental CellProfiler modules.
☆69Updated this week
Alternatives and similar repositories for CellProfiler-plugins
Users that are interested in CellProfiler-plugins are comparing it to the libraries listed below
Sorting:
- CellProfiler tutorial pipelines and images☆98Updated 3 weeks ago
- Methods for Image-Based Cell Profiling☆51Updated last year
- Microscopy Image Cytometry Toolkit☆114Updated 3 years ago
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆167Updated 3 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- Find profile pairs and compute metrics between them.☆20Updated 3 weeks ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 3 years ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆43Updated last month
- Python package for processing image-based profiling data☆127Updated 2 weeks ago
- CytoData 2016 – origin story☆18Updated 8 years ago
- Predicting Cell Health with Morphological Profiles☆39Updated 3 years ago
- Morphological profiling using deep learning☆122Updated last year
- Self-supervised models for encoding protein localization patterns from microscopy images☆78Updated 3 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated last month
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆63Updated 2 years ago
- Multiple-choice microscopy pipeline☆138Updated last week
- Image classification for imaging flow cytometry.☆28Updated 10 months ago
- Toolbox for the analysis of smFISH images.☆68Updated 2 years ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- ☆12Updated 4 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆17Updated this week
- Manual, source-code and binaries for the NanoJ-Fluidics project☆51Updated 3 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 9 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Read and write life sciences file formats☆142Updated 5 months ago
- starfish: unified pipelines for image-based transcriptomics☆244Updated last week
- Jupyter Notebooks for the Image Data Resource☆18Updated 3 weeks ago
- Jupyter notebooks for CellProfiler and friends☆14Updated 7 years ago