CellProfiler / CellProfiler-pluginsLinks
Community-contributed and experimental CellProfiler modules.
☆68Updated this week
Alternatives and similar repositories for CellProfiler-plugins
Users that are interested in CellProfiler-plugins are comparing it to the libraries listed below
Sorting:
- CellProfiler tutorial pipelines and images☆94Updated 2 months ago
- Methods for Image-Based Cell Profiling☆51Updated last year
- Predicting Cell Health with Morphological Profiles☆37Updated 3 years ago
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆162Updated 2 months ago
- Microscopy Image Cytometry Toolkit☆115Updated 3 years ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 3 years ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆43Updated this week
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- Python package for processing image-based profiling data☆124Updated last week
- Find profile pairs and compute metrics between them.☆19Updated 3 weeks ago
- Morphological profiling using deep learning☆119Updated 11 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 weeks ago
- Image classification for imaging flow cytometry.☆28Updated 9 months ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- ☆12Updated 4 years ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated 2 months ago
- Toolbox for the analysis of smFISH images.☆68Updated last year
- CytoData 2016 – origin story☆18Updated 8 years ago
- Multiple-choice microscopy pipeline☆135Updated last week
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆63Updated 2 years ago
- Read and write life sciences file formats☆141Updated 3 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 8 months ago
- Your Personal Assistant in Computational Bioimaging.☆44Updated 6 months ago
- Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…☆54Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 10 months ago
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆16Updated this week
- Histology Topography Cytometry Analysis Toolbox☆67Updated 2 years ago