Community-contributed and experimental CellProfiler modules.
☆77Oct 9, 2026Updated this week
Alternatives and similar repositories for CellProfiler-plugins
Users that are interested in CellProfiler-plugins are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Example CellProfiler pipelines.☆21Jul 19, 2022Updated 4 years ago
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆171Jul 21, 2025Updated last year
- CellProfiler tutorial pipelines and images☆106Sep 17, 2026Updated 3 weeks ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆45Sep 11, 2026Updated 3 weeks ago
- An open-source application for biological image analysis☆1,137Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Morphological profiling using deep learning☆130Updated this week
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Sep 14, 2020Updated 6 years ago
- A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.☆43Oct 2, 2026Updated last week
- AICS ML Segmentation (One-Way) Mirror☆28May 2, 2021Updated 5 years ago
- ImageJ plugin suite for image feature extraction☆11Dec 17, 2015Updated 10 years ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 6 years ago
- Methods for Image-Based Cell Profiling☆52May 8, 2024Updated 2 years ago
- ☆13Aug 7, 2020Updated 6 years ago
- Image stitching☆13Dec 23, 2018Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆21Aug 20, 2026Updated last month
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Sep 22, 2026Updated 2 weeks ago
- Cell Painting and other pipelines from the Imaging Platform☆25Jan 28, 2025Updated last year
- ☆45Sep 28, 2026Updated last week
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 10 months ago
- ☆92Dec 17, 2023Updated 2 years ago
- Common Java library for digital image processing books by Burger & Burge (OBSOLETE!)☆13Aug 3, 2022Updated 4 years ago
- Lectures for a napari training course☆53Aug 30, 2023Updated 3 years ago
- Example usage of the Benchling API: https://docs.benchling.com/☆38Jun 10, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TensorFlow-based classifier for microscope image focus quality.☆19Jun 14, 2022Updated 4 years ago
- fragbuilder is a tool to create, setup and analyze QM calculations on peptides.☆16Oct 31, 2014Updated 11 years ago
- ☆12Dec 23, 2020Updated 5 years ago
- ☆24Aug 27, 2020Updated 6 years ago
- A collection of tools for the analysis of biological data☆12Mar 22, 2016Updated 10 years ago
- Notebooks for VoidSeg☆17Feb 10, 2020Updated 6 years ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Jun 6, 2023Updated 3 years ago
- ☆21Aug 24, 2026Updated last month
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Linking napari layers with Matplotlib plots☆47Jul 1, 2026Updated 3 months ago
- Image Cytometry Standard file reading and writing.☆18Sep 28, 2026Updated last week
- ☆12Jul 25, 2019Updated 7 years ago
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆23Sep 7, 2026Updated last month
- ☆13Sep 8, 2020Updated 6 years ago
- A web app for exploratory data analysis of high-throughput screens (HTS)☆17Sep 19, 2018Updated 8 years ago
- StarDist plugin for ImageJ☆32May 9, 2022Updated 4 years ago