CellProfiler / CellProfiler-plugins
Community-contributed and experimental CellProfiler modules.
☆63Updated 2 months ago
Alternatives and similar repositories for CellProfiler-plugins:
Users that are interested in CellProfiler-plugins are comparing it to the libraries listed below
- CellProfiler tutorial pipelines and images☆94Updated 3 weeks ago
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆41Updated this week
- Methods for Image-Based Cell Profiling☆50Updated 11 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- ☆10Updated 4 years ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- Python package for processing image-based profiling data☆109Updated last week
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆152Updated 7 months ago
- Toolbox for the analysis of smFISH images.☆59Updated last year
- Microscopy Image Cytometry Toolkit☆116Updated 2 years ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆67Updated 8 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆97Updated 2 years ago
- Histology Topography Cytometry Analysis Toolbox☆67Updated last year
- Multiple-choice microscopy pipeline☆129Updated last month
- Predicting Cell Health with Morphological Profiles☆36Updated 3 years ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 2 months ago
- Example CellProfiler pipelines.☆15Updated 2 years ago
- Cell Painting and other pipelines from the Imaging Platform☆17Updated 2 months ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Bio-Formats image file format to raw format converter☆88Updated 3 weeks ago
- Spatial Single-Cell Analysis Toolkit☆91Updated 3 weeks ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- Jupyter notebooks for CellProfiler and friends☆13Updated 7 years ago
- ☆35Updated this week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 10 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆76Updated 7 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 6 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆53Updated 2 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 2 months ago