jump-cellpainting / JUMP-TargetLinks
Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays
☆23Updated last year
Alternatives and similar repositories for JUMP-Target
Users that are interested in JUMP-Target are comparing it to the libraries listed below
Sorting:
- ☆69Updated 10 months ago
- Cell Painting Gallery☆117Updated 3 weeks ago
- Images and other data from the JUMP Cell Painting Consortium☆180Updated 2 weeks ago
- Python package for processing image-based profiling data☆130Updated this week
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆52Updated 5 months ago
- Optimizing the Cell Painting assay for image-based profiling☆21Updated 5 months ago
- Evaluating batch correction methods for image-based cell profiling☆15Updated 5 months ago
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆70Updated 7 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆79Updated 5 months ago
- Morphological profiling using deep learning☆123Updated last year
- Cell Painting and other pipelines from the Imaging Platform☆22Updated 11 months ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆60Updated last year
- Label Free Prediction of Cell Painting from Brightfield Images☆32Updated 3 years ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆32Updated 3 years ago
- External repo for the EFAAR benchmarking paper☆25Updated 3 weeks ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 4 years ago
- ☆31Updated this week
- a package for streamlined multidomain data integration and translation based on cross-modal autoencoders architectures☆29Updated 2 years ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆138Updated 11 months ago
- Predicting Cell Health with Morphological Profiles☆39Updated 3 years ago
- ☆56Updated 3 years ago
- Biological Network Integration using Convolutions☆63Updated last year
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆44Updated 2 years ago
- A deep-learning framework for multi-omics integration☆31Updated 2 years ago
- Variational Auto-Encoder that generates synthetic gene expression data☆25Updated 2 years ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆141Updated last month
- ☆98Updated 2 months ago
- Multi-Scale Integrated Cell☆36Updated 3 years ago
- ☆19Updated 2 years ago
- Base implementation of the Multi-Encoder Variational AutoEncoder (ME-VAE)☆10Updated 3 years ago