jump-cellpainting / JUMP-Target
Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays
☆20Updated 2 months ago
Alternatives and similar repositories for JUMP-Target:
Users that are interested in JUMP-Target are comparing it to the libraries listed below
- ☆60Updated last month
- Cell Painting Gallery☆79Updated this week
- Label Free Prediction of Cell Painting from Brightfield Images☆26Updated 2 years ago
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆59Updated 4 months ago
- Optimizing the Cell Painting assay for image-based profiling☆19Updated 2 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated last month
- Images and other data from the JUMP Cell Painting Consortium☆165Updated last month
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- Evaluating batch correction methods for image-based cell profiling☆12Updated 2 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆75Updated 6 months ago
- Cell Painting and other pipelines from the Imaging Platform☆17Updated last month
- External repo for the EFAAR benchmarking paper☆18Updated 2 weeks ago
- Python package for processing image-based profiling data☆101Updated last week
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆27Updated 2 years ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆48Updated 8 months ago
- Predicting Cell Health with Morphological Profiles☆36Updated 3 years ago
- A deep-learning framework for multi-omics integration☆25Updated last year
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆34Updated 2 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆50Updated last year
- Morphological profiling using deep learning☆114Updated 5 months ago
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆39Updated last year
- Biological Network Integration using Convolutions☆62Updated last year
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆30Updated last month
- a package for streamlined multidomain data integration and translation based on cross-modal autoencoders architectures☆28Updated last year
- Synthetic whole-slide imaging tile generation with gene expression profiles infused deep generative models - Cell Reports Methods☆15Updated last year
- ☆38Updated 5 months ago
- ☆19Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆83Updated 2 months ago
- ☆55Updated last year