Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays
☆25Jan 3, 2025Updated last year
Alternatives and similar repositories for JUMP-Target
Users that are interested in JUMP-Target are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆72Feb 14, 2025Updated last year
- Label Free Prediction of Cell Painting from Brightfield Images☆36Jul 7, 2022Updated 4 years ago
- WS-DINO: a novel framework to use weak label information in a self-supervised setting to learn phenotypic representations from high-conte…☆24Mar 28, 2023Updated 3 years ago
- Optimizing the Cell Painting assay for image-based profiling☆21Aug 11, 2025Updated last year
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Dec 3, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Combining image-to-image and class guided denoising diffusion probabilistic models.☆55Mar 17, 2023Updated 3 years ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆37Aug 4, 2022Updated 4 years ago
- ☆12Jul 11, 2022Updated 4 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Oct 17, 2023Updated 2 years ago
- Morphological profiling using deep learning☆129Updated this week
- This repo will contain the code for training DINO models and extracting features☆17Aug 4, 2023Updated 3 years ago
- ☆10Sep 9, 2023Updated 2 years ago
- Cell Painting Gallery☆138Updated this week
- A large-scale pretraining dataset for bioimage transfer learning☆18Jul 31, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆55Aug 11, 2025Updated last year
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Python package for image-based profiling☆144Updated this week
- A tiny package supporting distributed computation of COCO metrics for PyTorch models.☆15Feb 28, 2023Updated 3 years ago
- Fast array utilities☆15Updated this week
- Cell Painting and other pipelines from the Imaging Platform☆24Jan 28, 2025Updated last year
- SHAPR - An AI approach to predict 3D cell shapes from 2D microscopic images☆17May 31, 2023Updated 3 years ago
- ☆10Mar 6, 2023Updated 3 years ago
- Evaluation code for the PanNuke dataset☆31Oct 20, 2020Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- rf☆12Jul 29, 2026Updated last month
- ☆18Nov 27, 2017Updated 8 years ago
- Images and other data from the JUMP Cell Painting Consortium☆189Aug 31, 2026Updated last week
- Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" b…☆16Oct 20, 2023Updated 2 years ago
- ☆17Apr 29, 2026Updated 4 months ago
- ☆13May 10, 2021Updated 5 years ago
- This is the public repository for the EPIC tool.☆19Aug 3, 2022Updated 4 years ago
- OCEAN - Optimized Cross rEActivity estimatioN☆12Apr 29, 2020Updated 6 years ago
- First place algorithm in ISBI 2024 Light My Cell competition, label-free cell painting☆14Jun 3, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Train and fine-tune diffusion models. Perform image-to-image class transfer experiments.☆15Feb 13, 2025Updated last year
- A jupyter notebook with some examples of threading and multiprocessing☆10Feb 2, 2016Updated 10 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Aug 31, 2026Updated last week
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆13Jul 11, 2026Updated last month
- Python library for parsing eLife article XML data.☆15Jul 14, 2026Updated last month
- Image Segmentation Techniques on the ISBI 2012 dataset: http://brainiac2.mit.edu/isbi_challenge/☆23Jun 9, 2017Updated 9 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆57Mar 27, 2021Updated 5 years ago