An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.
☆14Nov 5, 2026Updated this week
Alternatives and similar repositories for CytoDataFrame
Users that are interested in CytoDataFrame are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single cell Morphology Quality Control (coSMicQC)☆11Updated this week
- Harmonize high-content image analysis tool outputs for processing with Pycytominer and other Cytomining tools.☆22Nov 2, 2026Updated last week
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Jul 14, 2023Updated 3 years ago
- Single-cell morphological analysis☆16Apr 23, 2026Updated 6 months ago
- Find profile pairs and compute retrieval metrics between them.☆25Nov 2, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Image-based Profiling Recipe☆11Feb 7, 2025Updated last year
- Python package for image-based profiling☆146Nov 2, 2026Updated last week
- An open-source handbook of applied guidance and tools for sustainable software development and maintenance.☆26Updated this week
- Compendium of tools for the Imaging Platform☆16Oct 21, 2026Updated 3 weeks ago
- CellH5 is an HDF5 data format for cell-based assays in high-throughput microscopy, which stores high-dimensional image data along with in…☆12May 29, 2020Updated 6 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Oct 8, 2025Updated last year
- Bash scripts to simplify your life (let's hope so!)☆12Jul 21, 2025Updated last year
- Denoising via adaptive binning.☆14Aug 28, 2026Updated 2 months ago
- Image-based Profiling Handbook☆11Sep 18, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆46Nov 4, 2026Updated last week
- A spatial graph datastructure for python☆11Nov 2, 2026Updated last week
- Morphological profiling using deep learning☆132Updated this week
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated 7 months ago
- OMERO.server production docker image☆17Nov 4, 2026Updated last week
- Predicting Cell Health with Morphological Profiles☆41Jan 26, 2022Updated 4 years ago
- Morphological features from images and masks made easy.☆53Updated this week
- Code for CHAMMI-75 - ICLR 2026☆18Jun 29, 2026Updated 4 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆116Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆107Mar 12, 2026Updated 7 months ago
- python tools for BigDataViewer☆23Jul 2, 2026Updated 4 months ago
- Python toolbox for multi-omics data mapping and analysis☆29Apr 13, 2023Updated 3 years ago
- ☆73Feb 14, 2025Updated last year
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Feb 13, 2021Updated 5 years ago
- Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four☆12Oct 10, 2018Updated 8 years ago
- A web app that uses machine learning to recommend the most suitable journals based on the text content of your preprint☆22May 23, 2023Updated 3 years ago
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Sep 17, 2020Updated 6 years ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆22Jun 9, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.☆201Sep 1, 2026Updated 2 months ago
- Convert Identifiers in Biological Databases☆10Jul 26, 2026Updated 3 months ago
- A curated list of awesome cytodata resources https://www.cytodata.org/awesome-cytodata/☆99Oct 9, 2026Updated last month
- Nextflow language support for Visual Studio Editor☆38Oct 28, 2026Updated 2 weeks ago
- litemind is a Python library designed to empower developers to build sophisticated conversational agents and tools. It provides a flexibl…☆19Apr 5, 2026Updated 7 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆56Updated this week
- Reconstruction of synaptic structures in electron microscopy☆12Updated this week
Are these results useful?