Alternatives and similar repositories for 2016_Bray_NatureProtocols

Users that are interested in 2016_Bray_NatureProtocols are comparing it to the libraries listed below

• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆98Updated 3 weeks ago
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆78Updated 3 months ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆127Updated 2 weeks ago
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆39Updated 3 years ago
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆122Updated last year
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods_CPJUMP1
  ☆66Updated 9 months ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆69Updated this week
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆82Updated last year
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆138Updated last week
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆51Updated last year
• bioimage-io / bioimageio-chatbot
  Your Personal Assistant in Computational Bioimaging.
  ☆45Updated 7 months ago
• cytomining / copairs
  Find profile pairs and compute metrics between them.
  ☆20Updated 3 weeks ago
• Immunodynamics-Engel-Lab / msiflow
  collection of mass spectrometry imaging workflows
  ☆18Updated 5 months ago
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆66Updated 6 months ago
• carpenter-singh-lab / 2023_Cimini_NatureProtocols
  Optimizing the Cell Painting assay for image-based profiling
  ☆21Updated 3 months ago
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆99Updated 7 months ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆39Updated last month
• mehta-lab / dynamorph
  Learn morphological states of dynamic cells
  ☆12Updated 2 years ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated last week
• piximi / piximi
  A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.
  ☆36Updated last month
• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆43Updated last month
• broadinstitute / deepometry
  Image classification for imaging flow cytometry.
  ☆28Updated 10 months ago
• broadinstitute / cellpainting-gallery
  Cell Painting Gallery
  ☆112Updated 2 weeks ago
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆154Updated last year
• JacobHanimann / scDINO
  Self-Supervised Vision Transformers for multiplexed imaging datasets
  ☆57Updated last year
• AllenCell / aics-ml-segmentation
  ☆32Updated 3 months ago
• shntnu / cytomining-hackathon-wiki
  CytoData 2016 – origin story
  ☆18Updated 8 years ago
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆156Updated 3 months ago
• CellProfiler / CellProfiler-Analyst
  Open-source software for exploring and analyzing large, high-dimensional image-derived data.
  ☆167Updated 3 months ago
• jump-cellpainting / JUMP-Target
  Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays
  ☆23Updated 10 months ago