Supporting data files, documentation, and updated tips for the Cell Painting protocol
☆22Dec 3, 2021Updated 4 years ago
Alternatives and similar repositories for 2016_Bray_NatureProtocols
Users that are interested in 2016_Bray_NatureProtocols are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆25Jan 3, 2025Updated last year
- Jupyter Notebooks for the Image Data Resource☆20Jun 25, 2026Updated 2 months ago
- Morphological profiling using deep learning☆129Sep 2, 2026Updated 3 weeks ago
- Predicting Cell Health with Morphological Profiles☆41Jan 26, 2022Updated 4 years ago
- ☆72Feb 14, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ImageJ plugin suite for image feature extraction☆11Dec 17, 2015Updated 10 years ago
- A curated list of awesome cytodata resources https://www.cytodata.org/awesome-cytodata/☆95Sep 18, 2026Updated last week
- CellProfiler tutorial pipelines and images☆104Sep 17, 2026Updated last week
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆47Dec 20, 2023Updated 2 years ago
- A tutorial of classical shape analysis methods☆11Nov 25, 2023Updated 2 years ago
- R package for visualization of highly multiplexed imaging data☆37Aug 25, 2026Updated 3 weeks ago
- Images and other data from the JUMP Cell Painting Consortium☆189Updated this week
- Supporting code for doi 10.1021/acs.jcim.0c01344☆23Sep 10, 2022Updated 4 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆56Aug 11, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Jul 14, 2023Updated 3 years ago
- Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four☆12Oct 10, 2018Updated 7 years ago
- SegmenTation Analysis by ParaLlelization of 3D Datasets☆12Feb 22, 2024Updated 2 years ago
- 主要是用python进行生存分析的步骤,包括生存分析(逐步和单因素),KM曲线、决策曲线,ROC曲线,训练测试样本分布比较☆11Dec 21, 2020Updated 5 years ago
- Advanced Tool for Labeling And Segmentation☆41Oct 21, 2024Updated last year
- Single cell Morphology Quality Control (coSMicQC)☆11Sep 3, 2026Updated 3 weeks ago
- Yet Another Pixel Classifier (based on deep learning)☆36Jun 27, 2024Updated 2 years ago
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Dec 21, 2019Updated 6 years ago
- A Python package for plotting Kaplan-Meier survival curves☆12Jan 5, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Common Java library for digital image processing books by Burger & Burge (OBSOLETE!)☆13Aug 3, 2022Updated 4 years ago
- Learning High-Quality and General-Purpose Phrase Representations. Findings of EACL 2024☆16Feb 29, 2024Updated 2 years ago
- Methods for Image-Based Cell Profiling☆52May 8, 2024Updated 2 years ago
- Real-time image-based autofocus for all wide-field optical microscopy systems☆13Mar 24, 2022Updated 4 years ago
- Image-based Profiling Handbook☆11Updated this week
- Distributed segmentation for bio-image-analysis☆42Jun 5, 2026Updated 3 months ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Sep 9, 2026Updated 2 weeks ago
- Implementation of Decision Curve Analysis for Binary Classification☆12Sep 23, 2021Updated 5 years ago
- Shareable project for: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States☆10Nov 11, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Aug 7, 2020Updated 6 years ago
- Cell Painting Gallery☆140Sep 8, 2026Updated 2 weeks ago
- tipi4icy is a collection of Icy plugins based on TiPi☆11Apr 16, 2026Updated 5 months ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆28Dec 5, 2022Updated 3 years ago
- Saliency calculation module for Chainer☆12May 28, 2019Updated 7 years ago
- Code for CHAMMI-75 - ICLR 2026☆18Jun 29, 2026Updated 2 months ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆14Mar 3, 2023Updated 3 years ago