Supporting data files, documentation, and updated tips for the Cell Painting protocol
☆22Dec 3, 2021Updated 4 years ago
Alternatives and similar repositories for 2016_Bray_NatureProtocols
Users that are interested in 2016_Bray_NatureProtocols are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimizing the Cell Painting assay for image-based profiling☆21Aug 11, 2025Updated 7 months ago
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆25Jan 3, 2025Updated last year
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆45Dec 20, 2023Updated 2 years ago
- Jupyter Notebooks for the Image Data Resource☆19Feb 20, 2026Updated last month
- Morphological profiling using deep learning☆124Oct 19, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Predicting Cell Health with Morphological Profiles☆39Jan 26, 2022Updated 4 years ago
- ☆72Feb 14, 2025Updated last year
- Cell Painting and other pipelines from the Imaging Platform☆23Jan 28, 2025Updated last year
- ImageJ plugin suite for image feature extraction☆10Dec 17, 2015Updated 10 years ago
- A curated list of awesome cytodata resources☆89Nov 15, 2023Updated 2 years ago
- Code for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.☆44Jul 25, 2018Updated 7 years ago
- CellProfiler tutorial pipelines and images☆99Feb 25, 2026Updated last month
- A tutorial of classical shape analysis methods☆11Nov 25, 2023Updated 2 years ago
- CytoData 2016 – origin story☆18Sep 15, 2017Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R package for visualization of highly multiplexed imaging data☆34May 27, 2025Updated 9 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆55Aug 11, 2025Updated 7 months ago
- Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four☆12Oct 10, 2018Updated 7 years ago
- Cell Painting Gallery☆123Mar 16, 2026Updated last week
- Ideas, code and results of the 2018 CytoData hackathon☆13Jan 23, 2024Updated 2 years ago
- 主要是用python进行生存分析的步骤,包括生存分析(逐步和单因素),KM曲线、决策曲线,ROC曲线,训练测试样本分布比较☆11Dec 21, 2020Updated 5 years ago
- Advanced Tool for Labeling And Segmentation☆40Oct 21, 2024Updated last year
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Dec 21, 2019Updated 6 years ago
- Common Java library for digital image processing books by Burger & Burge (OBSOLETE!)☆13Aug 3, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Jul 14, 2023Updated 2 years ago
- SegmenTation Analysis by ParaLlelization of 3D Datasets☆12Feb 22, 2024Updated 2 years ago
- Yet Another Pixel Classifier (based on deep learning)☆36Jun 27, 2024Updated last year
- Learning High-Quality and General-Purpose Phrase Representations. Findings of EACL 2024☆16Feb 29, 2024Updated 2 years ago
- Real-time image-based autofocus for all wide-field optical microscopy systems☆12Mar 24, 2022Updated 4 years ago
- Methods for Image-Based Cell Profiling☆51May 8, 2024Updated last year
- Curated metadata for all studies published in the Image Data Resource☆16Mar 3, 2026Updated 3 weeks ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆12Updated this week
- Shareable project for: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States☆10Nov 11, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆17Mar 17, 2026Updated last week
- ☆13Aug 7, 2020Updated 5 years ago
- An open-source handbook of applied guidance and tools for sustainable software development and maintenance.☆23Mar 13, 2026Updated last week
- Single cell Morphology Quality Control (coSMicQC)☆10Mar 18, 2026Updated last week
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆11Mar 3, 2023Updated 3 years ago
- tipi4icy is a collection of Icy plugins based on TiPi☆11Oct 17, 2023Updated 2 years ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆166Feb 19, 2026Updated last month