carpenterlab / 2016_Bray_NatureProtocolsLinks
Supporting data files, documentation, and updated tips for the Cell Painting protocol
☆22Updated 4 years ago
Alternatives and similar repositories for 2016_Bray_NatureProtocols
Users that are interested in 2016_Bray_NatureProtocols are comparing it to the libraries listed below
Sorting:
- CellProfiler tutorial pipelines and images☆98Updated 2 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆79Updated 5 months ago
- ☆69Updated 11 months ago
- Python package for processing image-based profiling data☆131Updated this week
- Predicting Cell Health with Morphological Profiles☆39Updated 3 years ago
- Multiple-choice microscopy pipeline☆144Updated 2 months ago
- Cloud-based data annotation tools for biological images☆84Updated last year
- Morphological profiling using deep learning☆123Updated last year
- Your Personal Assistant in Computational Bioimaging.☆45Updated 9 months ago
- Community-contributed and experimental CellProfiler modules.☆72Updated this week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 3 months ago
- Optimizing the Cell Painting assay for image-based profiling☆21Updated 5 months ago
- Integrated pipeline for multiplexed image analysis☆101Updated last week
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆34Updated 6 months ago
- multimodal whole slide image registration in a graph structure☆99Updated last year
- Find profile pairs and compute retrieval metrics between them.☆21Updated last week
- Learn morphological states of dynamic cells☆12Updated 2 years ago
- Raw format to OME-TIFF converter☆56Updated last month
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year
- ☆36Updated 2 years ago
- Methods for Image-Based Cell Profiling☆51Updated last year
- Interactive visualization of spatial omics data☆73Updated last week
- CODEX data processing code☆12Updated 6 months ago
- Cell Painting and other pipelines from the Imaging Platform☆22Updated 11 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆161Updated 5 months ago
- collection of mass spectrometry imaging workflows☆21Updated this week
- ☆32Updated 5 months ago