Supporting data files, documentation, and updated tips for the Cell Painting protocol
☆22Dec 3, 2021Updated 4 years ago
Alternatives and similar repositories for 2016_Bray_NatureProtocols
Users that are interested in 2016_Bray_NatureProtocols are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimizing the Cell Painting assay for image-based profiling☆21Aug 11, 2025Updated 11 months ago
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆25Jan 3, 2025Updated last year
- Morphological profiling using deep learning☆129Updated this week
- Predicting Cell Health with Morphological Profiles☆41Jan 26, 2022Updated 4 years ago
- ☆72Feb 14, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ImageJ plugin suite for image feature extraction☆10Dec 17, 2015Updated 10 years ago
- A curated list of awesome cytodata resources☆93Nov 15, 2023Updated 2 years ago
- Code for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.☆44Jul 25, 2018Updated 7 years ago
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆47Dec 20, 2023Updated 2 years ago
- A tutorial of classical shape analysis methods☆11Nov 25, 2023Updated 2 years ago
- CytoData 2016 – origin story☆18Sep 15, 2017Updated 8 years ago
- Images and other data from the JUMP Cell Painting Consortium☆187Updated this week
- Supporting code for doi 10.1021/acs.jcim.0c01344☆23Sep 10, 2022Updated 3 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆55Aug 11, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Jul 14, 2023Updated 3 years ago
- Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four☆12Oct 10, 2018Updated 7 years ago
- Ideas, code and results of the 2018 CytoData hackathon☆13Jan 23, 2024Updated 2 years ago
- SegmenTation Analysis by ParaLlelization of 3D Datasets☆12Feb 22, 2024Updated 2 years ago
- 主要是用python进行生存分析的步骤,包括生存分析(逐步和单因素),KM曲线、决策曲线,ROC曲线,训练测试样本分布比较☆11Dec 21, 2020Updated 5 years ago
- Advanced Tool for Labeling And Segmentation☆41Oct 21, 2024Updated last year
- Single cell Morphology Quality Control (coSMicQC)☆11Jul 17, 2026Updated last week
- Yet Another Pixel Classifier (based on deep learning)☆36Jun 27, 2024Updated 2 years ago
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Dec 21, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A Python package for plotting Kaplan-Meier survival curves☆12Jan 5, 2025Updated last year
- Common Java library for digital image processing books by Burger & Burge (OBSOLETE!)☆13Aug 3, 2022Updated 3 years ago
- Learning High-Quality and General-Purpose Phrase Representations. Findings of EACL 2024☆16Feb 29, 2024Updated 2 years ago
- Methods for Image-Based Cell Profiling☆52May 8, 2024Updated 2 years ago
- Real-time image-based autofocus for all wide-field optical microscopy systems☆13Mar 24, 2022Updated 4 years ago
- Curated metadata for all studies published in the Image Data Resource☆16May 19, 2026Updated 2 months ago
- Distributed segmentation for bio-image-analysis☆42Jun 5, 2026Updated last month
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆12May 28, 2026Updated last month
- Cell Painting Gallery☆136Jul 14, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- CellProfiler plugins for multiplexed image analysis☆12Feb 16, 2021Updated 5 years ago
- tipi4icy is a collection of Icy plugins based on TiPi☆11Apr 16, 2026Updated 3 months ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆27Dec 5, 2022Updated 3 years ago
- Saliency calculation module for Chainer☆12May 28, 2019Updated 7 years ago
- Code for CHAMMI-75 - ICLR 2026☆18Jun 29, 2026Updated 3 weeks ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆13Mar 3, 2023Updated 3 years ago
- GNN-based cancer prognosis prediction using image-derived Cell-Graphs☆14Oct 14, 2021Updated 4 years ago