Supporting data files, documentation, and updated tips for the Cell Painting protocol
☆22Dec 3, 2021Updated 4 years ago
Alternatives and similar repositories for 2016_Bray_NatureProtocols
Users that are interested in 2016_Bray_NatureProtocols are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimizing the Cell Painting assay for image-based profiling☆21Aug 11, 2025Updated 9 months ago
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆25Jan 3, 2025Updated last year
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆47Dec 20, 2023Updated 2 years ago
- Jupyter Notebooks for the Image Data Resource☆19Feb 20, 2026Updated 3 months ago
- Morphological profiling using deep learning☆125Oct 19, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Predicting Cell Health with Morphological Profiles☆41Jan 26, 2022Updated 4 years ago
- ☆72Feb 14, 2025Updated last year
- Cell Painting and other pipelines from the Imaging Platform☆24Jan 28, 2025Updated last year
- ImageJ plugin suite for image feature extraction☆10Dec 17, 2015Updated 10 years ago
- A curated list of awesome cytodata resources☆91Nov 15, 2023Updated 2 years ago
- Code for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.☆44Jul 25, 2018Updated 7 years ago
- CellProfiler tutorial pipelines and images☆103Updated this week
- A tutorial of classical shape analysis methods☆11Nov 25, 2023Updated 2 years ago
- CytoData 2016 – origin story☆18Sep 15, 2017Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆55Aug 11, 2025Updated 9 months ago
- Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four☆12Oct 10, 2018Updated 7 years ago
- Cell Painting Gallery☆128May 4, 2026Updated 3 weeks ago
- Ideas, code and results of the 2018 CytoData hackathon☆13Jan 23, 2024Updated 2 years ago
- 主要是用python进行生存分析的步骤，包括生存分析(逐步和单因素)，KM曲线、决策曲线，ROC曲线，训练测试样本分布比较☆11Dec 21, 2020Updated 5 years ago
- Advanced Tool for Labeling And Segmentation☆40Oct 21, 2024Updated last year
- ☆11Apr 5, 2022Updated 4 years ago
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Dec 21, 2019Updated 6 years ago
- Common Java library for digital image processing books by Burger & Burge (OBSOLETE!)☆13Aug 3, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- SegmenTation Analysis by ParaLlelization of 3D Datasets☆12Feb 22, 2024Updated 2 years ago
- Learning High-Quality and General-Purpose Phrase Representations. Findings of EACL 2024☆16Feb 29, 2024Updated 2 years ago
- Real-time image-based autofocus for all wide-field optical microscopy systems☆12Mar 24, 2022Updated 4 years ago
- Methods for Image-Based Cell Profiling☆52May 8, 2024Updated 2 years ago
- Curated metadata for all studies published in the Image Data Resource☆16Updated this week
- Implementation of Decision Curve Analysis for Binary Classification☆12Sep 23, 2021Updated 4 years ago
- Shareable project for: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States☆10Nov 11, 2020Updated 5 years ago
- ☆13Aug 7, 2020Updated 5 years ago
- Single cell Morphology Quality Control (coSMicQC)☆11May 12, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Harmonize high-content image analysis tool outputs for processing with Pycytominer and other Cytomining tools.☆19Updated this week
- CellProfiler plugins for multiplexed image analysis☆12Feb 16, 2021Updated 5 years ago
- tipi4icy is a collection of Icy plugins based on TiPi☆11Apr 16, 2026Updated last month
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆27Dec 5, 2022Updated 3 years ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆174May 14, 2026Updated last week
- Image-based Profiling Handbook☆11Apr 15, 2025Updated last year
- Saliency calculation module for Chainer☆12May 28, 2019Updated 6 years ago