Alternatives and similar repositories for 2016_Bray_NatureProtocols

Users that are interested in 2016_Bray_NatureProtocols are comparing it to the libraries listed below

• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆93Updated last month
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods
  ☆63Updated 4 months ago
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆76Updated 9 months ago
• cytomining / copairs
  Find profile pairs and compute metrics between them.
  ☆17Updated 3 weeks ago
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆37Updated 3 years ago
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆54Updated last month
• broadinstitute / imaging-platform-pipelines
  Cell Painting and other pipelines from the Imaging Platform
  ☆19Updated 4 months ago
• mehta-lab / dynamorph
  Learn morphological states of dynamic cells
  ☆12Updated 2 years ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆117Updated last week
• carpenter-singh-lab / 2023_Cimini_NatureProtocols
  Optimizing the Cell Painting assay for image-based profiling
  ☆20Updated 5 months ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆30Updated 4 months ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆37Updated last year
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆81Updated last year
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆25Updated last month
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆90Updated 2 months ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆59Updated 2 weeks ago
• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆41Updated 2 weeks ago
• hubmapconsortium / codex-pipeline
  CODEX data processing code
  ☆12Updated last week
• KerenLab / CellSighter
  ☆33Updated last year
• jump-cellpainting / JUMP-Target
  Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays
  ☆21Updated 5 months ago
• broadinstitute / deepometry
  Image classification for imaging flow cytometry.
  ☆29Updated 5 months ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆66Updated last week
• joonkeekim / mediar-napari
  ☆20Updated last year
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆51Updated last year
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆92Updated last month
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆132Updated 3 months ago
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆56Updated last year
• michaellee1 / CellSeg
  ☆23Updated 2 years ago
• huangch / qust
  QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis
  ☆28Updated this week
• peng-lab / BaSiCPy
  ☆81Updated 3 months ago