Supporting data files, documentation, and updated tips for the Cell Painting protocol
☆22Dec 3, 2021Updated 4 years ago
Alternatives and similar repositories for 2016_Bray_NatureProtocols
Users that are interested in 2016_Bray_NatureProtocols are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays☆25Jan 3, 2025Updated last year
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆47Dec 20, 2023Updated 2 years ago
- Jupyter Notebooks for the Image Data Resource☆19Feb 20, 2026Updated last month
- Morphological profiling using deep learning☆124Oct 19, 2024Updated last year
- Predicting Cell Health with Morphological Profiles☆40Jan 26, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆72Feb 14, 2025Updated last year
- Cell Painting and other pipelines from the Imaging Platform☆24Jan 28, 2025Updated last year
- ImageJ plugin suite for image feature extraction☆10Dec 17, 2015Updated 10 years ago
- Code for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.☆44Jul 25, 2018Updated 7 years ago
- CellProfiler tutorial pipelines and images☆101Mar 24, 2026Updated 3 weeks ago
- A tutorial of classical shape analysis methods☆11Nov 25, 2023Updated 2 years ago
- R package for visualization of highly multiplexed imaging data☆35May 27, 2025Updated 10 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆55Aug 11, 2025Updated 8 months ago
- Cell Painting Gallery☆126Mar 31, 2026Updated 2 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Ideas, code and results of the 2018 CytoData hackathon☆13Jan 23, 2024Updated 2 years ago
- Advanced Tool for Labeling And Segmentation☆40Oct 21, 2024Updated last year
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Dec 21, 2019Updated 6 years ago
- Common Java library for digital image processing books by Burger & Burge (OBSOLETE!)☆13Aug 3, 2022Updated 3 years ago
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Jul 14, 2023Updated 2 years ago
- A Python package for plotting Kaplan-Meier survival curves☆12Jan 5, 2025Updated last year
- Yet Another Pixel Classifier (based on deep learning)☆36Jun 27, 2024Updated last year
- Learning High-Quality and General-Purpose Phrase Representations. Findings of EACL 2024☆16Feb 29, 2024Updated 2 years ago
- Real-time image-based autofocus for all wide-field optical microscopy systems☆12Mar 24, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Methods for Image-Based Cell Profiling☆52May 8, 2024Updated last year
- Curated metadata for all studies published in the Image Data Resource☆16Mar 3, 2026Updated last month
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆12Apr 7, 2026Updated last week
- Shareable project for: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States☆10Nov 11, 2020Updated 5 years ago
- Distributed segmentation for bio-image-analysis☆42Jan 18, 2026Updated 2 months ago
- ☆13Aug 7, 2020Updated 5 years ago
- Single cell Morphology Quality Control (coSMicQC)☆11Updated this week
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆11Mar 3, 2023Updated 3 years ago
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆18Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- CellProfiler plugins for multiplexed image analysis☆12Feb 16, 2021Updated 5 years ago
- tipi4icy is a collection of Icy plugins based on TiPi☆11Oct 17, 2023Updated 2 years ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆166Updated this week
- Image-based Profiling Handbook☆11Apr 15, 2025Updated last year
- Saliency calculation module for Chainer☆12May 28, 2019Updated 6 years ago
- Fragment Graphical Variational AutoEncoding for Screening and Generating Molecules☆14Nov 21, 2022Updated 3 years ago
- GNN-based cancer prognosis prediction using image-derived Cell-Graphs☆14Oct 14, 2021Updated 4 years ago